Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00652 ATGGCGGCCTCAACAATGGCTCTGTCCTCACCCTCACTCGCCGGAAAGGCGGTGAAACTTACGCCCACCCCCCCTGAGCTTCTCGGCAATGGCAGAGTCAGTATGAGGAAATCCGTTGCCAAGCCTGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGGCCATTCTCCGGCGAGCCTCCGTCCTACCTCATCGGAGATTCACCGGTGACTACGGTTGGGATACTGCCGGACTTTCCGCAGACCCTGAGACCTTCGCCAAGAACCGTGGGCCATGCTCGGAGCGTTGGGCTGCGTGTTCCCGGAGCTTCTTTCCCGCAGCGGCGTGAAGTTTGGAGAAGCAGTGTGGTTCAAGGCGGGTTCACAAATCTTCAGCGAAGGTGGGCTGGACTACTTAGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCTCAGGTGGTTCTCACGGGGGCCGTCGAGGGATACCGTATCGCCGGTGGCCCACTTGGGAAGTGACCGACCCGATTTACCCGGGTGGGAGCTTTGACCCGTTGGGGCTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGAAGATTGGCGATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATCGTCACCGGAAAGGGCCCACTTGAGAATCTTGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCTACCAACTTTGTTCCTGGAAAATGA 771 56.55 MAASTMALSSPSLAGKAVKLTPTPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGPFSGEPPSYLIGDSPVTTVGILPDFPQTLRPSPRTVGHARSVGLRVPGASFPQRREVWRSSVVQGGFTNLQRRWAGLLREPELDPRPKHSSHLGLSGGSHGGRRGIPYRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7885643 7887855 + ClCG03G006930.1 Cla03g00652 269152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00652 256 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 75 - -
Cla03g00652 256 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 171 256 - -
Cla03g00652 256 MobiDBLite consensus disorder prediction 141 160 - -
Cla03g00652 256 Gene3D Chlorophyll a/b binding protein domain 152 253 - -
Cla03g00652 256 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 75 IPR001344 GO:0009765|GO:0016020
Cla03g00652 256 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 171 256 IPR001344 GO:0009765|GO:0016020
Cla03g00652 256 Pfam Chlorophyll A-B binding protein 174 222 IPR022796 -
Cla03g00652 256 SUPERFAMILY Chlorophyll a-b binding protein 169 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00652 Cla-Chr3:7885643 Cla10g01121 Cla-Chr10:25634840 8.85E-81 dispersed
Cla01g02379 Cla-Chr1:37491657 Cla03g00652 Cla-Chr3:7885643 1.74E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00652 K08912 - cpap:110819729 292.737