Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00662 ATGCGATGTTCTTACTGTACAAAGCACTTCTTCCAGCGGTTTTTCACGGATGAGTTCCAAATCAACGGCGGCGGAGGCAGCGGCGGCGCTCTTCAAAGCACTTTTTTGTCTCCTGAGCTTTTGCCTTCTCTTGGAGCCAGTATTAACCAAACCACCACCCTTCGTAAACACATCATTTCCCCTTTTGACCCTCGTTATCGAGCATGGGAGATGTGGCTAGTGGTTCTAGTGATATACTCAGCTTGGATTTGTCCATTCGAATTTGCATTTCTTCCTTACAAGCAAAATGCTCTTTTCATCATAGATCACTTTGTGAATGCCTTCTTTGCCATCGATATCATTTTAACTTTCTTCGTCGCATATCTCGACTCCCAATCCTATCTTCTCATCGATCACCCCAAAAAGATTGCACTAAGGTATTTATCTACTTGGTTTATATTCGACGTTTGTTCTACCGCGCCATTACAATCAATCAGTTTCTTGTTCACAAATCAAAGTGGAGAAGTTGGGTTTAAGCTTCTCAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTAGAAAAGGACATCAGGTTCAATTATTTCTGGACTCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACATTGTGCTGGGTGCTTCAATTATGTAATAGCAGATAAATATCCAGACTCAAAACAAACATGGATTGGTGCAGTTAACCCAAATTTCAAAGAAGATAGTGTATGGAACCTTTATATTACTTCACTTTATTGGTCCATTACCACCTTAACAACCACTGGCTATGGCGATCTCCATGCTGAAAACCCTAGAGAAATGCTGTTTGATATCTTTTATATGCTCTTCAATTTGGGCTTCACTTCCTATCTCATCGGTAACATGACTAATCTCGTCGTCCACTGGACCAGTCGCACTCGAAACTTCAGAGATTCGGTGCAAGCTGCGACGGAGTTCGCATTGAGAAACCAGTTACCGGAACGGATACAAGACCAGATGTTGTCACACATATGTCTCAAGTTCAGAACTGAGGGGTTGAAGCAACAAGACACATTGAATGACCTTCCAAAAGCCATTAGAGCCTCCATAGCTCACTATCTCTTCTATCCTATTCTTCAAAAGGCCTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTACTTCCCACCCAAAGAAGACATTATACTTCAAAATGAGGCACAAACAGATCTCTATATATTAGTCTCAGGCAGTGTGGATCTAATATTATCCAATAATGAAGATGGGCAGGATGAGCAAGTTATAGGAGGAGCAACAGCTGGAGAAATGTTTGGAGAATTTGGAGTTTTATGTCAAAAGCCACAGCCTTTCACAGTTAGAACCACAAAGCTTTCTCAAATATTAAGGCTCAAGAGAACTTCTTTGTTGTATATTCTTCAATCAAACACAGAAGATGGGAATATTATAATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAGAATTATGGGGAATATTTGGTGTGATAATGGTGAGCTATTAAAGAAAGTTGAAAATTATTCTAAAGAGGATGATGAAAATTATGTGGGAAGTAATAATAATAATTTAGATGAACATAGAATTGAGTTTGATGAAGAGGTTGAAGGGGGTGAAAAGGAAATTATTAAATTTTCTCATAACAACAAATTACAAGGAAGAAATAATGGAGGTCAACCTTCATTAGAAAATTTCCCAACAGTTAGCTCTAATTACTTGAATAATGTCTCTAGACAAATCAAGAAAAGGGTTACTGTATATATGCAGCATCCTCAAGATAGAAGCAAGGTTAAAAGTCAATATGGGAAGTTGATGCTTCTCCCCAATTCCATCGAAGAGCTTTGCAAAATTGCTGGTGAAAAGTTTGGAGGGCAAATGCCAACAAAAGTGATGAGTGCGGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAGTGATATTGAAAATTGTGGTCTTCAATGA 2061 38.96 MRCSYCTKHFFQRFFTDEFQINGGGGSGGALQSTFLSPELLPSLGASINQTTTLRKHIISPFDPRYRAWEMWLVVLVIYSAWICPFEFAFLPYKQNALFIIDHFVNAFFAIDIILTFFVAYLDSQSYLLIDHPKKIALRYLSTWFIFDVCSTAPLQSISFLFTNQSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNYVIADKYPDSKQTWIGAVNPNFKEDSVWNLYITSLYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDSVQAATEFALRNQLPERIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAHYLFYPILQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLILSNNEDGQDEQVIGGATAGEMFGEFGVLCQKPQPFTVRTTKLSQILRLKRTSLLYILQSNTEDGNIIMNNFFMKMKEYERIMGNIWCDNGELLKKVENYSKEDDENYVGSNNNNLDEHRIEFDEEVEGGEKEIIKFSHNNKLQGRNNGGQPSLENFPTVSSNYLNNVSRQIKKRVTVYMQHPQDRSKVKSQYGKLMLLPNSIEELCKIAGEKFGGQMPTKVMSADNAEIDDINVIRDGDHLFLLYSDIENCGLQ 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7986662 7993551 - ClCG03G007070.1 Cla03g00662 269162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00662 686 PRINTS EAG/ELK/ERG potassium channel family signature 254 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla03g00662 686 PRINTS EAG/ELK/ERG potassium channel family signature 298 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla03g00662 686 PRINTS EAG/ELK/ERG potassium channel family signature 280 291 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla03g00662 686 PRINTS EAG/ELK/ERG potassium channel family signature 102 112 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla03g00662 686 PRINTS EAG/ELK/ERG potassium channel family signature 79 86 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla03g00662 686 PRINTS EAG/ELK/ERG potassium channel family signature 113 122 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla03g00662 686 Pfam Cyclic nucleotide-binding domain 404 492 IPR000595 -
Cla03g00662 686 Pfam Ion transport protein 67 313 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla03g00662 686 SUPERFAMILY Voltage-gated potassium channels 61 307 - -
Cla03g00662 686 ProSiteProfiles cAMP/cGMP binding motif profile. 384 506 IPR000595 -
Cla03g00662 686 SUPERFAMILY cAMP-binding domain-like 311 503 IPR018490 -
Cla03g00662 686 PANTHER POTASSIUM CHANNEL KAT1 2 676 - -
Cla03g00662 686 Gene3D - 67 307 - -
Cla03g00662 686 ProSiteProfiles KHA domain profile. 606 686 IPR021789 -
Cla03g00662 686 CDD CAP_ED 384 500 IPR000595 -
Cla03g00662 686 PANTHER POTASSIUM CHANNEL AKT1 2 676 IPR045319 GO:0005249|GO:0006813
Cla03g00662 686 Gene3D Jelly Rolls 351 516 IPR014710 -
Cla03g00662 686 Pfam KHA, dimerisation domain of potassium ion channel 605 675 IPR021789 -
Cla03g00662 686 SMART cnmp_10 384 504 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00662 Cla-Chr3:7986662 Cla06g01070 Cla-Chr6:23198647 6.34E-08 dispersed
Cla03g00662 Cla-Chr3:7986662 Cla01g00052 Cla-Chr1:416897 1.78E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00662 K21867 - csv:101215858 1179.47