Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00672 ATGGACAAGAATCGGAGTGGAGAGCGACGAATGGCGGCGTTTTCCTCTTCGGCGGATAGCAATACTAGGGCTCGTCCTAGCACCACCACTAGCACCGACAACAGACTTGCCGTACTTGTCAAATACAATGTCGATGCTGGGCTTTTGAACAAGTTTGAGCTCTCGGATGCATCTGGTGAGTCTTTTAACTATTCCAGATCAGTTCTTGATGCTCCTGTTTCTGTACCCGAAGAACAAATTACTGCCTATTTGTCTAAGATTCAGAGGGGTGGGTTGGTTCAACCCTTTGGTTGTTTGCTTGCCATTGAAGAATCTAGTTTTAAGATTATTAGTTATAGTGAGAATTGTTTTGAATTATTGGGGCTTAATGATCAATTTGGGTCGGCACAGGGTAAGGGTCTGATTGGGGTTGATATGAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGTGAAAGCGGCTTTGTCCAGGGAGATTTCGCTGTTGAACCCTGTTTGGGTCCATTCTAGGACTACCCAGAAGCCATTTTATGCTATATTGCATAGAATTGATGTGGGGATTATATTTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCGCTTGCAGGTGCTGTGCAGTCACAGAAACTTGCAGTTCGAGCGATTTCCAGGTTGCAGGCTCTACCTAGTGGTGATATTGGTATTCTATGTGATACGGTTGTTGAAGATGTTCAAAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCACAATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCAGACTTAGAGCCATACCTGGGTTTGCATTATCCTGCCATTGATATACCTCAAGCGGCTCGTTTTTTGTTCAAGCAGAACCGCGTCAGGATGATTTGTGATTGCCATGCGAAGCCTGTGCAGGTCGTTCAAAGTGATGAACTAAAGCAGCCTCTTTGTTTGGTGAATTCAACACTAAGAGCACCATATAGCTGTCATTTGCAATACATGGCAAATATGGGTTCCTTAGCTTCATTAGTGATGGCAGTAATCGTGAATAGTGATGACTCACCAACAAAGCTATGGGGCCTGGTAGTGTGCCACCATACTTCTCCTCGATATGTCCCTTTCCCACTTCGTTATGCCTGTGAGTTTCTCATGCAGGCCTTCGGGCTGCAGCTTTACATGGAACTTCAATTGGCATTACAATTAACAGAGAAAAGAATCCTCAAGACACAAACTTTACTTTGTGACATGCTTCTCCGAGGCTCCCCTTATTCATTGGTGACTCAGTCTCCTAGTATAATGGATATTGTGAAGTGCGATGGTGCTGCATTGTACTATAACGGGGCATGTTGTTTATTAGGTGTAACTCCAACCAAAGCACAAGTCAAAGATCTTGCTGAGTGGATACTAAATAACCATGGGGATTCTACGGGGCTGAGCACGGATAGTTTGGCTGATGCTGGCTACCCTGAAGCTGCTTCACTAGGTGATGCTGTGTGTGGTATGGCAGCTGCAAGAATCACTTCAAAGGATTTCTTATTCTGGTTCAGGTCCCATGCTGCAAAGGAAATTCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATTGTGGACGAATGCACCCGAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTTTGTCTTGGGAAGTTCAAGAAATAAATGCCATTCACTCATTGCAGCTCATAATGAGGGAGTCTTTTCTGAATGCTAGGGACAGTAATTTAAAGGCAGAACATTCTGTCCAGTTGAGTGATGCTGAGATCCAGGATATCAATGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACTGTTCCAATTTTGGGGGTTGACTCAACTGGTTTGATCAATGGATGGAATGCTAAAATTTCTGAACTTGTGGGATTACAAACTGGAGAAGCTTTGGGGAAATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAACTGTGGAAGATTTACTTTCCCATGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTGGAACTGGCAAAGAAAAGTCTAACGTGTATATTGTAGTTAATGCTTGCACAAGTAGAGATTACACAAACAAAGTTGTTGGAGTTTGCTTTGTTGGGCAAGATCTTACATCCGAGAAAGGTGTGATGGATAAATTTATCCGTCTACAGGGAGATTATAAGACTATTGTTGAAAGTCTGAGTCCATTGATTCCTCCAATGTTTGTTTCCGACGAGAATGGTTACTGCTACGAATGGACTGCAGCCATGGAAAAACTTACTGGTTGGAGGAAAAATGAAGTTATAGGAAAAATGCTAGCTGGGGAGATCTTTGGGAATTTTTGTAGGTTGAAAGGTTTAGATACCCTCACTAGGTTTATGATTCTATTATATCAAGGTATTAGTGGTGAAGTAACCGAAAAGTTTCCATTAGGATTTTTCAACAAGGATGGGAATTATGTAGATGTGTTGTTAACATCGAACAAGAGAACTGATGCCGAAGGAAATGCCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAGCCCAACTTACATGGGGTCTTAGAAGGACTTGGGACGGGTGATAGGGAGGGCATTCTGCAGCATAAGGAATTGAGCTTCTTAAAGCATGAGATGAAAAATCCTTTAAATGGCCTTAGATTTACTCATGAACTCCTCGTAAATTCTGGCATTACAGAAAACCAGAAACTCTTCCTTGATACTAGTGATGCATGCGAGAGACAAATCATGACAATCATAGAGGATATGGACTTAAGAAGTTTAGAAAGAGGCCAAGTAGAGATAAACAGAGAAGAATTTCTCCTCGGGAGTGTTCTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAGAGAGAGGAACATTCAACTTTTTCATGAAATTCCAGAAGAAATCAAAACTTTAACTCTTTGTGGCGATCAAATTAAGCTTCAGATGGTTTTGTCAGATTTCTTACTCAACGCAGTCCAGTATGCGCCTGTTCTGGATGGTTGGGTTGAAATCAAAATTTCTTCTGGCTTGAAGCTTATACAAGATGGAAATGAACATATTCAATTGCAGATCAGAATGTCACATCCAGGTCAAGGTTTGCCTCCTGAACTAATCCAGGATATGGTTGGAGGAGGACAACAGTTGACTTCAGAGCAAGGCCTGACCCTAAACCTATCACGCAGACTTCTCAATAAACTGAACGGTAATGTCCGTTATGTTAGAGAGCAAACCAAATGCTACTTCCTCATCGATCTCGAACTCATGTTAAGGCGCTCAAGGGGGTCGATGGAAGCTACAACAAGCCAAAGGACTTGA 3393 42.2 MDKNRSGERRMAAFSSSADSNTRARPSTTTSTDNRLAVLVKYNVDAGLLNKFELSDASGESFNYSRSVLDAPVSVPEEQITAYLSKIQRGGLVQPFGCLLAIEESSFKIISYSENCFELLGLNDQFGSAQGKGLIGVDMRALFTPSSGASLVKAALSREISLLNPVWVHSRTTQKPFYAILHRIDVGIIFDLEPARSVDPALSLAGAVQSQKLAVRAISRLQALPSGDIGILCDTVVEDVQKLTGYDRVMVYKFHNDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVQVVQSDELKQPLCLVNSTLRAPYSCHLQYMANMGSLASLVMAVIVNSDDSPTKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQLTEKRILKTQTLLCDMLLRGSPYSLVTQSPSIMDIVKCDGAALYYNGACCLLGVTPTKAQVKDLAEWILNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMAAARITSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDCGRMHPRSSFKAFLEVAKSRSLSWEVQEINAIHSLQLIMRESFLNARDSNLKAEHSVQLSDAEIQDINELSSVACEMVRLIETATVPILGVDSTGLINGWNAKISELVGLQTGEALGKSLVNEIVHEDSRGTVEDLLSHALQGKEDKNVELKLRSFGTGKEKSNVYIVVNACTSRDYTNKVVGVCFVGQDLTSEKGVMDKFIRLQGDYKTIVESLSPLIPPMFVSDENGYCYEWTAAMEKLTGWRKNEVIGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGISGEVTEKFPLGFFNKDGNYVDVLLTSNKRTDAEGNAIGCICFLQIVQPNLHGVLEGLGTGDREGILQHKELSFLKHEMKNPLNGLRFTHELLVNSGITENQKLFLDTSDACERQIMTIIEDMDLRSLERGQVEINREEFLLGSVLDAIICQIMIVVRERNIQLFHEIPEEIKTLTLCGDQIKLQMVLSDFLLNAVQYAPVLDGWVEIKISSGLKLIQDGNEHIQLQIRMSHPGQGLPPELIQDMVGGGQQLTSEQGLTLNLSRRLLNKLNGNVRYVREQTKCYFLIDLELMLRRSRGSMEATTSQRT 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8144024 8149941 + ClCG03G007180.1 Cla03g00672 269172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00672 1130 SUPERFAMILY GAF domain-like 208 395 - -
Cla03g00672 1130 SMART HKATPase_4 1001 1113 IPR003594 -
Cla03g00672 1130 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
Cla03g00672 1130 Pfam GAF domain 230 399 IPR003018 GO:0005515
Cla03g00672 1130 Pfam PAS fold 748 867 IPR013767 GO:0006355
Cla03g00672 1130 Pfam PAS fold 617 731 IPR013767 GO:0006355
Cla03g00672 1130 MobiDBLite consensus disorder prediction 10 30 - -
Cla03g00672 1130 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
Cla03g00672 1130 Pfam Phytochrome region 412 587 IPR013515 GO:0006355|GO:0009584
Cla03g00672 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Cla03g00672 1130 Gene3D - 404 577 IPR043150 -
Cla03g00672 1130 CDD HisKA 894 949 IPR003661 GO:0000155|GO:0007165
Cla03g00672 1130 Gene3D - 931 1107 IPR036890 -
Cla03g00672 1130 CDD PAS 625 732 IPR000014 -
Cla03g00672 1130 Gene3D PAS domain 615 736 - -
Cla03g00672 1130 SUPERFAMILY GAF domain-like 407 586 - -
Cla03g00672 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Cla03g00672 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1112 IPR036890 -
Cla03g00672 1130 SMART gaf_1 228 409 IPR003018 GO:0005515
Cla03g00672 1130 TIGRFAM sensory_box: PAS domain S-box protein 621 736 IPR000014 -
Cla03g00672 1130 MobiDBLite consensus disorder prediction 1 30 - -
Cla03g00672 1130 SMART pas_2 747 817 IPR000014 -
Cla03g00672 1130 SMART pas_2 616 683 IPR000014 -
Cla03g00672 1130 Gene3D PAS domain 86 331 - -
Cla03g00672 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 866 IPR035965 -
Cla03g00672 1130 SMART HisKA_10 889 953 IPR003661 GO:0000155|GO:0007165
Cla03g00672 1130 Pfam His Kinase A (phospho-acceptor) domain 894 953 IPR003661 GO:0000155|GO:0007165
Cla03g00672 1130 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355|GO:0009584
Cla03g00672 1130 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Cla03g00672 1130 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Cla03g00672 1130 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355|GO:0009584
Cla03g00672 1130 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Cla03g00672 1130 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355|GO:0009584
Cla03g00672 1130 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cla03g00672 1130 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355|GO:0009584
Cla03g00672 1130 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355|GO:0009584
Cla03g00672 1130 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cla03g00672 1130 CDD PAS 759 867 IPR000014 -
Cla03g00672 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 36 1118 - -
Cla03g00672 1130 Gene3D - 209 560 IPR029016 -
Cla03g00672 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 728 IPR035965 -
Cla03g00672 1130 PIRSF Phytochrome_conventional 14 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cla03g00672 1130 Pfam PAS fold 82 195 IPR013654 GO:0006355
Cla03g00672 1130 PANTHER PHYTOCHROME E 36 1118 - -
Cla03g00672 1130 Gene3D PAS domain 762 872 - -
Cla03g00672 1130 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Cla03g00672 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1111 IPR003594 -
Cla03g00672 1130 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00672 Cla-Chr3:8144024 Cla05g00707 Cla-Chr5:6599070 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00672 K12123 - csv:101214900 2067.74