Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00681 ATGTTTACAGGACTTGTGTATCAATCAATGCTGTCAAACAATCATAACAACAGTCCTCCTACTCCCAGAACCAGGTTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTTCTCTCAATGAAGAAGCACGAGATGCTTACAGTCTGGGAGAAGTCAACAGTTACGATCTCTTCACATTTGCTGGTGATAGTTGTGGGTCATTTAATGAGGAAGAGCTCTTAGAAGGGATATCAGTGGTAAAAGATTTCTTTGATGGATTCCAAAGGCCAGAAGGGAGGACTTCTAAGCAACGTCTTCTAGTTGTAGCAAACAGGTTACCTGTGTCTGCTGTTAGGAAAGGGAAGGAGGCATGGCATCTCGAAATCAGCGTGGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTCGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGCAGGACAGAGAGCCTTAGAGAAGGCATTAGCTGAAAAGAAATGCATACCAGTCTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTCCCACAAGAAGATCGGCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCACAATAATACGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCGTCTCGTTCAGAGCTGTTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCCTGCACCCGTATTCTTGGATTAGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAACTGACTCGCATAGCTGCTTTTCCAATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAATTACAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGACAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAATATCAAAAGCTAACAAGTCAGGTTCATGAGATTGTTGGGCGAATTAATGGGAGATTTGGCACTCTTAGTGCAGTTCCAATACATCATCTGGATCGTTCCCTTGACTTCCATGCATTATGTGCTTTATATGCGGTCACTGATGTGGCACTAGTTACATCTTTGAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCCGGTGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCCAGCTGATGAAAGAGAAAGGCGACACCATCATAACTTCATGCACGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAATGACACCATAGTTGAAGCTCAGATCAGAACCAGACAGATACCACCTTTTCTTCCAATTAGAGAAGCAGTGAACTGTTATTCTCGCTCACACAATCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACAGAAGCAGTTGATCCCCTTGGAAGAAGATATGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAGATGTGAGAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACTACAGTGGTTGTCCTCAGTGGGAGTGACAGAAGTGTCCTAGATGATAATTTCGGCAATTACAACATGTGGTTGGCAGCAGAAAATGGGATGTTCTTACGTCCGACAAAGGGCGAATGGATGACGACAATGCCTGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACTGAAAGAACTCCTAGATCCCATTTTGAGCTTCGTGAAACTTCACTGGTGTGGAACTACAAATATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCACCTATGGACTGGTCCAATCTCAAATGCATCGGTTGATGTTGTCCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGGGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGATAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACATTTTTCGAACCCGACCTTCCTTCTGAAGTGCCACCTGCAGCAAGAACAACAGTCGCCAATCCATTCGGAGGAGTACCGGTGCCAAAGCTCTCAAACAATGGAGCCCCACCAAGCAGGTCGGCACGCCTCAAGAAACAGCGCTCCCTTTCCATTTTAGAAAGACGAGGAAATAGCCATGGGAGTGCAGTGTTTTGGAGGCCTATAGTGCAGGATCGATTGTCGCTGCACGAGGGTTCATCTGTTCTTGATCTCAAGGGTGACGATTACTTCTCCTGTGCTGTGGGGCGGAAACGATCCAGTGCTAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAGGAATTGTCAGAATGTTCAGAGTCAAGTTTAAGTTAG 2829 43.2 MFTGLVYQSMLSNNHNNSPPTPRTRLERLLRERELRRSNRSSLNEEARDAYSLGEVNSYDLFTFAGDSCGSFNEEELLEGISVVKDFFDGFQRPEGRTSKQRLLVVANRLPVSAVRKGKEAWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNTMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLSAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPFLPIREAVNCYSRSHNRLVILGFNATLTEAVDPLGRRYGQIRDMDLKVHPDVREPLKKLCDDQNTTVVVLSGSDRSVLDDNFGNYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPPAARTTVANPFGGVPVPKLSNNGAPPSRSARLKKQRSLSILERRGNSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDDYFSCAVGRKRSSARYLLGSSDDVVTLVKELSECSESSLS 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8237610 8245164 - ClCG03G007280.1 Cla03g00681 269181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00681 942 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 102 567 IPR012766 GO:0003825|GO:0005992
Cla03g00681 942 Gene3D Glycogen Phosphorylase B; 349 551 - -
Cla03g00681 942 Pfam Glycosyltransferase family 20 102 567 IPR001830 GO:0003824|GO:0005992
Cla03g00681 942 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 68 933 - -
Cla03g00681 942 Gene3D Glycogen Phosphorylase B; 94 348 - -
Cla03g00681 942 SUPERFAMILY HAD-like 601 931 IPR036412 -
Cla03g00681 942 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 68 933 IPR001830 GO:0003824|GO:0005992
Cla03g00681 942 Gene3D - 626 815 IPR023214 -
Cla03g00681 942 Gene3D - 692 772 - -
Cla03g00681 942 Pfam Trehalose-phosphatase 626 822 IPR003337 GO:0003824|GO:0005992
Cla03g00681 942 CDD HAD_TPP 600 820 - -
Cla03g00681 942 Coils Coil 26 46 - -
Cla03g00681 942 CDD GT20_TPS 102 567 IPR001830 GO:0003824|GO:0005992
Cla03g00681 942 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 570 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00681 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101213690 1755.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00681 Cla-Chr3:8237610 Cla10g00141 Cla-Chr10:1490923 1.24E-145 dispersed
Cla11g01682 Cla-Chr11:30400639 Cla03g00681 Cla-Chr3:8237610 0 transposed
Cla03g00681 Cla-Chr3:8237610 Cla07g00244 Cla-Chr7:2689452 2.23E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g299 Blo01g00884 . . . . . . Bma01g01475 . Cmo18g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy12g00042 . . . . . . . . . Sed08g2711 . . . Cma18g00443 . Car18g00415 . . Bhi08g02131 Tan05g2550 Cmetu12g0972 Lac10g1001 . . . Cla03g00681 Cam03g0713 Cec03g0686 Cco03g0723 Clacu03g0728 Cmu03g1320 Cre03g0996 Lsi02g00848 Csa01g02281 . Cme12g01248
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00186 . 45 567 Trehalose Biosynthesis Gene Families AT4G24040 57.3 1.2e-178 623.6
Cla07g00244 . 1 872 Trehalose Biosynthesis Gene Families AT1G06410 75.1 0.0e+00 1359.0
Cla01g02336 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1355.5
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1090.5
Cla06g01651 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.7e-303 1038.1
Cla11g01682 . 85 716 Trehalose Biosynthesis Gene Families AT1G16980 64.3 1.2e-245 846.3
Cla03g00681 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.0e-241 833.2
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G23870 75.5 0.0e+00 1341.3
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1210.7
Cla10g00141 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1105.9
Cla07g00244 . 1 873 Trehalose Biosynthesis Gene Families AT1G23870 58.6 0.0e+00 1080.1
Cla05g02526 . 1 846 Trehalose Biosynthesis Gene Families AT1G60140 73.2 0.0e+00 1308.9
Cla06g01651 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1233.8
Cla01g02336 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cla10g00141 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cla07g00244 . 1 876 Trehalose Biosynthesis Gene Families AT1G60140 58.0 6.3e-308 1053.5
Cla10g00141 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.3
Cla07g00244 . 1 875 Trehalose Biosynthesis Gene Families AT1G68020 60.9 0.0e+00 1125.2
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cla06g01651 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1186.4
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cla01g02336 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.4e-293 1005.7
Cla07g00244 . 1 882 Trehalose Biosynthesis Gene Families AT1G70290 55.8 7.6e-287 983.4
Cla10g00141 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 7.1e-285 976.9
Cla11g01682 . 1 962 Trehalose Biosynthesis Gene Families AT1G78580 76.3 0.0e+00 1458.4
Cla03g00681 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1365.1
Cla05g02526 . 33 841 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cla06g01651 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.3e-301 1031.2
Cla01g02336 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.0 1.1e-299 1026.2
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cla07g00244 . 24 872 Trehalose Biosynthesis Gene Families AT2G18700 56.3 8.0e-287 983.4
Cla10g00141 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cla01g02336 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.9
Cla07g00244 . 1 880 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1141.3
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1137.5
Cla06g01651 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cla11g01682 . 93 962 Trehalose Biosynthesis Gene Families AT4G27550 59.9 5.4e-298 1020.4
Cla03g00681 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.6e-288 986.9
Cla11g01682 . 1 962 Trehalose Biosynthesis Gene Families AT1G78580 76.3 0.0e+00 1458.4
Cla03g00681 . 10 939 Trehalose Biosynthesis Gene Families AT1G78580 73.4 0.0e+00 1365.1
Cla11g01682 . 85 716 Trehalose Biosynthesis Gene Families AT1G16980 64.3 1.2e-245 846.3
Cla03g00681 . 95 703 Trehalose Biosynthesis Gene Families AT1G16980 64.6 1.0e-241 833.2
Cla11g01682 . 83 641 Trehalose Biosynthesis Gene Families AT1G17000 60.1 1.7e-190 663.3
Cla03g00681 . 100 618 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.8e-190 662.5
Cla11g01682 . 93 962 Trehalose Biosynthesis Gene Families AT4G27550 59.9 5.4e-298 1020.4
Cla03g00681 . 99 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.6e-288 986.9
Cla10g00141 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cla01g02336 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.9
Cla07g00244 . 1 880 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1141.3
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1137.5
Cla06g01651 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cla10g00141 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.3
Cla07g00244 . 1 875 Trehalose Biosynthesis Gene Families AT1G68020 60.9 0.0e+00 1125.2
Cla05g02526 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cla06g01651 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cla07g00244 . 1 872 Trehalose Biosynthesis Gene Families AT1G06410 75.1 0.0e+00 1359.0
Cla01g02336 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1355.5
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1090.5
Cla06g01651 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.7e-303 1038.1
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1186.4
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cla01g02336 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.4e-293 1005.7
Cla07g00244 . 1 882 Trehalose Biosynthesis Gene Families AT1G70290 55.8 7.6e-287 983.4
Cla10g00141 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 7.1e-285 976.9
Cla05g02526 . 1 841 Trehalose Biosynthesis Gene Families AT1G23870 75.5 0.0e+00 1341.3
Cla06g01651 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.4 0.0e+00 1210.7
Cla10g00141 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cla01g02336 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1105.9
Cla07g00244 . 1 873 Trehalose Biosynthesis Gene Families AT1G23870 58.6 0.0e+00 1080.1
Cla05g02526 . 1 846 Trehalose Biosynthesis Gene Families AT1G60140 73.2 0.0e+00 1308.9
Cla06g01651 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1233.8
Cla01g02336 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cla10g00141 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cla07g00244 . 1 876 Trehalose Biosynthesis Gene Families AT1G60140 58.0 6.3e-308 1053.5
Cla05g02526 . 33 841 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cla06g01651 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.3e-301 1031.2
Cla01g02336 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.0 1.1e-299 1026.2
Cla10g00141 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cla07g00244 . 24 872 Trehalose Biosynthesis Gene Families AT2G18700 56.3 8.0e-287 983.4
Cla01g00186 . 45 567 Trehalose Biosynthesis Gene Families AT4G24040 57.3 1.2e-178 623.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001443 2 5 3 3 2 1 2 2 1 2 2 2 2 2 2 2 2 4 2 2 2 2 2 2 1 2 2 6 6 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00681 Cla_Chr03 FPKM 8.211061 9.461699 5.998864 6.464555 17.876871 18.647587 16.359102 5.835888 5.538043 4.989573