Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00686 | ATGGAAACGAATAACAGTAACAACGGGGTGAGGTTTTTGTTGGGGAAGCAATCGTCGATGGCGCCGGACCGGAAATCGGAGGAGGTGGCGGAGGCGGAGGCGGAGGCGGGGGAAGACGGGGAGGAGATCGATCCAGGGGTGAGATTGATGTATTTGGCGAATGAAGGCGATTTAGAAGGGATTAAGGAGCTTCTAGATTCTGGAATTGATGTCAATTTTCACGATGTTGATAATCGGACGGCGCTTCATGTTGCTGCTTGTCAAGGCTGCTCCAAGATCGTCGATTTATTGCTCCACCGTGGCGCTGAGATTGACCCTAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATTCTACAAAAATCATGAAGTTATCAAATTGCTGGAAAAAAGAGGCGCAAAACATCTGATGGCTCCCATGCTTGTCAAGCATGCTCGTGAAGTCCCAGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTGACCAAGGGTACCTTCCATCTTGCATCATGGCGCGGAATCCAAGTTGCAGTCAAAGAGCTTCCCGAGGATGTGATTTCAGAGGAGGATAAAGTGAACGCCTTTAGAGATGAGCTTGCATTGCTTCAGAAGATTCGGCATCCTAATGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCTAAGGGAGATCTTTGTCAACTGTTACAGAGAAAAGGAGCATTAAAACCAATTGTAGCTGTGAAATTTGCCCTTGATATTGCAAGGGGAATGAACTATTTACACGAAAATAAACCTGCCCCGATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAATTGCTCACAGTCAAGGAGGATAAACCTCTAATTTGTCAAGACACTGCTTGCCGATATGTCGCTCCAGAAGTTTTCAAAAACAATGGATACGATACCAAAGTAGATGTCTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGGCAACCACCGTTTTCAAACAAAAAAGAAAATGCCATTCTTAAAGAGTATGCAGCCGGAGTACGCCCTCCTTTCAAAGCTCCAGCTAAATGCTACGCCCATGGAATTAAAGAGTTGATTGAAGATTGCTGGGATGAGAAGCCATCAAAGAGACCAACTTTTAGGCAGATAATCACGAGGCTGGAAACAATTCATCACAGTCTTAGCCATAGAAGGCGTTGGAAGCTCCCAACAATGAGATGTTTTCAGGATCCAGAAGCTAAGATAAGAAGAGACCATCTCTCAAGCAGCCGGAGCCTTTCATCACGATCTGCAAGCAGCATATGA | 1389 | 44.71 | METNNSNNGVRFLLGKQSSMAPDRKSEEVAEAEAEAGEDGEEIDPGVRLMYLANEGDLEGIKELLDSGIDVNFHDVDNRTALHVAACQGCSKIVDLLLHRGAEIDPKDRWGSTPLADAIFYKNHEVIKLLEKRGAKHLMAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLQRKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLICQDTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAILKEYAAGVRPPFKAPAKCYAHGIKELIEDCWDEKPSKRPTFRQIITRLETIHHSLSHRRRWKLPTMRCFQDPEAKIRRDHLSSSRSLSSRSASSI | 462 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8320961 | 8326267 | - | ClCG03G007320.2 | Cla03g00686 | 269186 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00686 | 462 | ProSiteProfiles | Protein kinase domain profile. | 127 | 422 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla03g00686 | 462 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 | 12 | 445 | - | - | |
Cla03g00686 | 462 | Gene3D | Phosphorylase Kinase; domain 1 | 161 | 237 | - | - | |
Cla03g00686 | 462 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Cla03g00686 | 462 | PIRSF | ILK | 1 | 437 | - | - | |
Cla03g00686 | 462 | SUPERFAMILY | Ankyrin repeat | 48 | 137 | IPR036770 | - | |
Cla03g00686 | 462 | ProSiteProfiles | Ankyrin repeat region circular profile. | 77 | 109 | - | - | |
Cla03g00686 | 462 | SMART | ANK_2a | 77 | 106 | IPR002110 | GO:0005515 | |
Cla03g00686 | 462 | SMART | ANK_2a | 110 | 139 | IPR002110 | GO:0005515 | |
Cla03g00686 | 462 | SMART | ANK_2a | 44 | 73 | IPR002110 | GO:0005515 | |
Cla03g00686 | 462 | Pfam | Ankyrin repeats (3 copies) | 49 | 136 | IPR002110 | GO:0005515 | |
Cla03g00686 | 462 | SUPERFAMILY | Protein kinase-like (PK-like) | 171 | 418 | IPR011009 | - | |
Cla03g00686 | 462 | Pfam | Protein tyrosine and serine/threonine kinase | 171 | 415 | IPR001245 | GO:0004672|GO:0006468 | |
Cla03g00686 | 462 | ProSiteProfiles | Ankyrin repeat profile. | 77 | 109 | IPR002110 | GO:0005515 | |
Cla03g00686 | 462 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 12 | 445 | - | - | |
Cla03g00686 | 462 | CDD | STKc_MAP3K-like | 171 | 415 | - | - | |
Cla03g00686 | 462 | Gene3D | Transferase(Phosphotransferase) domain 1 | 238 | 453 | - | - | |
Cla03g00686 | 462 | Gene3D | - | 15 | 150 | IPR036770 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g02349 | Cla03g00686 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00686 | Cla-Chr3:8320961 | Cla09g01326 | Cla-Chr9:21182462 | 1.43E-140 | dispersed | |
Cla02g02210 | Cla-Chr2:37254735 | Cla03g00686 | Cla-Chr3:8320961 | 2.80E-13 | transposed | |
Cla01g02349 | Cla-Chr1:37242729 | Cla03g00686 | Cla-Chr3:8320961 | 0 | wgd | |
Cla02g01792 | Cla-Chr2:32948878 | Cla03g00686 | Cla-Chr3:8320961 | 3.49E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80429 | PF07714 | PK_Tyr_Ser-Thr | 3.00E-55 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00686 | - | - | csv:101205123 | 843.573 |