Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00689 ATGATGGTGGCCAAGAGCTTCTTCGTTTTCATTGTTCTTGTGGTGGATTGCTTCATGTTCTTCAGATTTGCAGATTCCAAGGTTCCCCAAGAAGAGGTTGATGTACTACAGCAAATTACGAGAACATTAGGTGCAGTTTATTGGAAATTCAATAGTGACTCTTGTGCCGTTGAAATGTTTGGGGTGACAGAAAAATCTCCCAGGGGATCTGAGACTATAATTGGTTGTGATTGCAACATCGAGAACAGTACACTTTGTCACGTCGTAAGGATAGAATTCAAAAATCACAATCTGCCCGGTGTTCTTCCACCTGAAATAGTCAAACTTCCTCACCTGCAAGTAGTTGATTTTGCTTACAACTACCTTCATGGTAATATACCTCAGGAATGGGCTTCAATGCGGCTGACATCAATCTCTCTTCTTGTAAATCGGTTATCAGGGGAAATACCAGCAGAATTGGGGAATATTACTACTCTAACATTACTGAACCTTGAAGCAAACCAATTTACTGGTGCAATACCATCACAACTCGGGAGGTTAAGCAACCTGCAAGACTTGTTGCTATCATCTAATCAATTGACTGGCACATTACCGACAACATTTGCTGGTTTGAAAAACCTAACAAATTTCCGGATAAATGATAACAACCTAAATGGATCCATACCTGAGTTCATACAGAATTGGATACTACTCAACAGATTAGAACTACATGCAAGTGGACTTCAGGGACCAATTCCTGCAAAAATATCCCTTTTGAGGAACTTAAAAGAATTAAGGATCAGTGATATTAACGGGCCAAAGCAGGATTTTCCTGAGTTGAGAAACATGACGGGCATGGTTAGATTGGTTCTGAGAAATTGTAACATTGCTGGAAAGATTCCTTCATATGTGTGGATGTTACCAGACATGGAAATGCTGGACGTCAGCTTTAACCATATAACAGGGGAAATTCCAGAGGATATAAACATGGAGCGCATTAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGCGACCTACCAGAGTCAATCTTGAAGGATGGAACTAATGTCGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGAGCAGCATGCTTGTAGAAAGAATTTGAATATGAATCTGAACTTGTTTCGAAGTTCCTCCACCGGCAACACCTTACAAGAAAGTCTCCCCTGCTTAAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTTGTTAATTCTGGTGGGAATGACTTAACTATGGAGGTTAACAACAGAAATGTTCTCTACAACGGGGATGCAGATGTTGAAGGTGGAACAGCAAAATTCTACATTGATCATGATAGCCACTGGGGATTGAGTAGTACTGGAGATTTCATGGATGATTTTGATTACCAAAATACACGCTACACTTTATCCTTGCCTTCATCAAATTTGTCCGAGCTATATTCAACAGCACGTCGAAGTCCAATTACGCTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTCAAGCTTCATTTTGCTGAGTTACAATTCACAGATGATAGGACATATACAAGTCTTGGAAGGCGGAAATTTGATATCTACATTCAGGATAGGTTGGTATTGGAGAATTTTGATATTGAAGAGAAGGCAGGAGGAACTCAAAAACCAGCCGAATTGCAGTTTAATAACATTAGTGTAATTAATCATGTTCTGGAGATCCGATTCTATTGGGCTGGAAAAGGGACAACTAGAATTCCTGATAGAGGAGTTTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTTCAATCCGCGAAAGTGGTAAAAAGAAAATTGTAGCAATTGCTGTTGGCATTGCGGTTGGATTATTATGCCTTGCTACAGTCATTATAGTGGGACTTCTTTGGTGGAAAGGCACTCTTAGAGCAATCAGGCGGAGTAAAGGTGGTACAGATCTTGCAGGAATAGAAGTGCAAACTGGAATTTTTACGTTGAAACAAATAAAAGCTGCCACCAATCATTTTGATTCTTGTAATAAGATTGGAGAAGGTGGCTTTGGCCCCGTTTATAAGGGTCAATTGGTTGATGGTACTATTGTAGCAATCAAGCAACTCTCGTCCAAATCAAAGCAGGGAAATCGTGAATTTCTCAATGAGATAGGAATGATCTCTTGTTTGCAACACCCGAATCTAGTCAAGCTCCATGGATGCTGTATTGAAGGGGATCAATTGTTGTTGGTGTATGAATATTTGGAAAACAATAGTCTTGCCCGAGCACTATTTGGTCCAGATTATAGTCGGCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATCGGTATAGCGAAAGGCTTAGCATATCTCCATGAGGAATCAAGCCTCAAAATCGTTCACAGAGACATCAAAGCTACTAATGTGCTACTGGATGGCGAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGACGATGAGGAGAAGACTCATATCACCACTAGAGTGGCCGGGACTATAGGATATATGGCTCCGGAATATGCACTTTGGGGTTATCTGACCTACAAAGCAGATGTGTATAGTTTTGGAGTTGTGGCCTTGGAAATTGTAAGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTTATGGAGTTGGTAGATGAGAAGTTGAAACCAGAAATCGACAGGAAAGAAGCGGAAAATATGGTGAAAATAGCCCTTCTCTGCACCAATGCTTCACCATCAGTAAGGCCTGTGATGTCGGAAGTGGTGAACATGCTCGAAGGACGAATGGCGATTCCAGACCTGATCCCGGAACCGAGTAGTTATAATGAAGATCTGAGGTTCAAGGCAATGAGAGATATGCGTAAACAGCAACAGAGCCAAAGCCTGAGTGAAAGCCAAACCCAAAATTCCACAATGCAAACATTTGAGTCTTCCACTACATCTGGAAATGAGTTCTATGACATCAACCCAGAGCCAAGATCATCAACAACCTGA 3060 40.59 MMVAKSFFVFIVLVVDCFMFFRFADSKVPQEEVDVLQQITRTLGAVYWKFNSDSCAVEMFGVTEKSPRGSETIIGCDCNIENSTLCHVVRIEFKNHNLPGVLPPEIVKLPHLQVVDFAYNYLHGNIPQEWASMRLTSISLLVNRLSGEIPAELGNITTLTLLNLEANQFTGAIPSQLGRLSNLQDLLLSSNQLTGTLPTTFAGLKNLTNFRINDNNLNGSIPEFIQNWILLNRLELHASGLQGPIPAKISLLRNLKELRISDINGPKQDFPELRNMTGMVRLVLRNCNIAGKIPSYVWMLPDMEMLDVSFNHITGEIPEDINMERIRFLFLSGNMLSGDLPESILKDGTNVDLSYNNLTWQGPEQHACRKNLNMNLNLFRSSSTGNTLQESLPCLKDSICSKYSKCWFVNSGGNDLTMEVNNRNVLYNGDADVEGGTAKFYIDHDSHWGLSSTGDFMDDFDYQNTRYTLSLPSSNLSELYSTARRSPITLTYFHHCLDNGNYSVKLHFAELQFTDDRTYTSLGRRKFDIYIQDRLVLENFDIEEKAGGTQKPAELQFNNISVINHVLEIRFYWAGKGTTRIPDRGVYGPLISAISVYSDLKYCSIRESGKKKIVAIAVGIAVGLLCLATVIIVGLLWWKGTLRAIRRSKGGTDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGQLVDGTIVAIKQLSSKSKQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDYSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGRSNNDYVPSETCVCLLDWACHLQQSGNLMELVDEKLKPEIDRKEAENMVKIALLCTNASPSVRPVMSEVVNMLEGRMAIPDLIPEPSSYNEDLRFKAMRDMRKQQQSQSLSESQTQNSTMQTFESSTTSGNEFYDINPEPRSSTT 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8343865 8357322 - ClCG03G007350.2 Cla03g00689 269189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00689 1019 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 68 995 - -
Cla03g00689 1019 ProSiteProfiles Protein kinase domain profile. 676 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00689 1019 Pfam Protein tyrosine and serine/threonine kinase 680 947 IPR001245 GO:0004672|GO:0006468
Cla03g00689 1019 Gene3D - 405 600 - -
Cla03g00689 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Cla03g00689 1019 Gene3D Phosphorylase Kinase; domain 1 641 751 - -
Cla03g00689 1019 SUPERFAMILY L domain-like 76 318 - -
Cla03g00689 1019 PANTHER RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED 68 995 - -
Cla03g00689 1019 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Cla03g00689 1019 SUPERFAMILY Protein kinase-like (PK-like) 659 949 IPR011009 -
Cla03g00689 1019 SMART serkin_6 676 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00689 1019 Gene3D Ribonuclease Inhibitor 266 392 IPR032675 -
Cla03g00689 1019 Gene3D Transferase(Phosphotransferase) domain 1 752 954 - -
Cla03g00689 1019 Pfam Malectin domain 406 594 IPR021720 -
Cla03g00689 1019 Gene3D Ribonuclease Inhibitor 198 265 IPR032675 -
Cla03g00689 1019 Gene3D Ribonuclease Inhibitor 46 197 IPR032675 -
Cla03g00689 1019 MobiDBLite consensus disorder prediction 973 1019 - -
Cla03g00689 1019 CDD STKc_IRAK 682 949 - -
Cla03g00689 1019 MobiDBLite consensus disorder prediction 976 1019 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00689 Cla-Chr3:8343865 Cla09g02163 Cla-Chr9:39277179 0 dispersed
Cla03g00689 Cla-Chr3:8343865 Cla11g01693 Cla-Chr11:30524384 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80430 PF07714 PK_Tyr_Ser-Thr 4.20E-48 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00689 - - csv:101204874 1840.47