Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00696 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTAGCCTTAGTTCAAACCTTGGCGATAGTGGCGACCGAGCTAGTTTCTCGATTTTCAGAGAAATTCTTCTTCTTCCAGCGGAGGAATTCGCGATCTCTGATAAGGAAATTGGAGGTTTGTTTAGTCTTTTTGGAGTTTTTGAAGGAAACAAATGCGAATTTGCCTCATACAGCGTTGCTCTGTCTGAAGGAGCTGTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCTGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGAATTTTTGTTGACGAACGTGACGAAGCATTGAGGACTCGCTTCCTCTTGTTCCTCGACGAGTTTGAGAATGGGAGGCTTCCCAACCCGAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAACGCAAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGTGATATTGAGCCTACGGTAGCGGTGTTAAACGGTTTCGTTGCTTTTACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGATTCAGGCGCATCAAATCAGAAGAAGTTGAAGAAGAACTTGATTACTCAGGAAATTGCTGAGACGTTTTTAACTGTCCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAGACATACGATCGCAGCTCGATTACTAGATGGATGGAAGAAGGCCACAACACTTGTCCGAAAACGGGGCAAATGCTCATTCATACCCGCCTTGCTCCCAACCGTGCATTGAGGAATTTGATCGTGCAATGGTGCATTGCTCATGGAGTTCCTTATGATCCACCAGAAGGGATGGATGCATCTGCAGAGAGTTATACAATGGCTTCTCCCACACGAGCTGCACTGGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAATTATCCATTGGATCGCAGGATGCAAAGACAATTGCTGCTCGTGAGATTCGTTTATTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCTGAAGCCGGTGCCATTCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACTCAGTTGCACAGGAGAATTCCGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAGCCCAAGTATTGAGATTTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTCCATGACTACAAGAAGAGAATAGCAGAGGAGGATGGTGCAGTTGAAGCATTGGCAGGGCTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCTGTTGGGGCCGAAGCAGTCGCTAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGTGGAGCTGCCACGACTGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGCTTGCTCCAAACACTCCTATTTACCGGTACGAAGCGAGCACGAAGAAAGGCTGCTTCGCTAGCTAGAGTATTCCAGAGATGTGAGCATGTCACAATGCATTACGGCGGATTGGGGGTTGGTTACGCCTATGCAAATAACTCAGCTTCTAGCAGAGATTCAAACTTTGCAAGCGAGGTATCTGTGCCGATATCCATCTCGACTTTCACCACCCGTGTACCACAAAAATGCAATGAGATGAAGGAAAAGGCACTCAAAGTGGAAGCAGAGTTGGCCATTTTCTCCAGCAACCATTTGAGATCAGATCAAGACACTTGTACCATAACAGAAATCAATATGGACCCATTATGA 2283 46.17 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAIVATELVSRFSEKFFFFQRRNSRSLIRKLEVCLVFLEFLKETNANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPLEEVELGVDVREQVELLQKQLRRTRIFVDERDEALRTRFLLFLDEFENGRLPNPREMREFFVDKLKIRNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDEVDSGASNQKKLKKNLITQEIAETFLTVPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPEGMDASAESYTMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNSVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSIAQVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEDGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYANNSASSRDSNFASEVSVPISISTFTTRVPQKCNEMKEKALKVEAELAIFSSNHLRSDQDTCTITEINMDPL 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8402840 8406016 - ClCG03G007420.1 Cla03g00696 269196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00696 760 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Cla03g00696 760 SUPERFAMILY ARM repeat 394 670 IPR016024 -
Cla03g00696 760 SMART arm_5 547 585 IPR000225 GO:0005515
Cla03g00696 760 SMART arm_5 506 546 IPR000225 GO:0005515
Cla03g00696 760 SMART arm_5 463 504 IPR000225 GO:0005515
Cla03g00696 760 SMART arm_5 587 627 IPR000225 GO:0005515
Cla03g00696 760 SMART arm_5 421 461 IPR000225 GO:0005515
Cla03g00696 760 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 693 - -
Cla03g00696 760 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Cla03g00696 760 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Cla03g00696 760 Coils Coil 212 232 - -
Cla03g00696 760 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Cla03g00696 760 Gene3D - 392 667 IPR011989 -
Cla03g00696 760 CDD RING-Ubox_PUB 292 334 IPR045210 -
Cla03g00696 760 PANTHER U BOX DOMAIN-CONTAINING 11 693 - -
Cla03g00696 760 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Cla03g00696 760 SUPERFAMILY RING/U-box 277 362 - -
Cla03g00696 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Cla03g00696 760 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00152 Cla-Chr3:1576062 Cla03g00696 Cla-Chr3:8402840 2.19E-91 dispersed
Cla03g00696 Cla-Chr3:8402840 Cla04g00653 Cla-Chr4:21013803 5.16E-143 dispersed
Cla03g00696 Cla-Chr3:8402840 Cla01g01287 Cla-Chr1:26145141 1.71E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00696 - - csv:101204151 1266.91