Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00699 ATGGATGATAATGTTACCTTCAACAATAATAACCACCAATTCTTTTCGGCTGATCAACTTGAAGATTCCGACGAATCAAAACCCGCCCCTGATTCTCCTCCTCCTAATTCCGCCGCCGCCGCCACCGCCACCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTTCTGTCGGTGAAAATTAATGGCGACAACCCAAGAAATTCCTCTGGTTCTACAACTCCACCTTCTGATGCTTGGGCCTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCTCCTTATCCCAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCAGCGAGGAAGCAAGTAGAGAGGAATCGGCTTGATCCAACTATGTTGCTCATTACATATTCGTGTGAGCATAATCATTCCGGTCCGGTTTCTAGGAACAACAATTCCAACCACAACCAAACCGATGCGGTGAAACCCGATTCACCGGAGACGGTTCCGGTTGAAGTAGAAGAGAAATTTGTGGAGATAGTGGGAGAGGAGTCGTTGATAACGGGAGATGAGTTTAGTTGGTTTGGAGAAATGGAAACGACGTCGTCTACAGTGCTTGAAAGCTCCATTTTTTCGGGGAGAGCATCCAGTGGATTGGTGGATCATTCAATTTCAAGTGACGTGGCAATGCTTTTGCCCATGGGGGATGATGACATGGACGAATCACTCTTTGCGGATCTCGGCGAGTTGCCGGAATGTTCTCTGGTGTTCCGGCGTGGCGGAGGTCGGGGATTACCGGTGGATGAACAACCGGCTGCTGCCCAGCGGCGGATCACACCGTGGTGTGGAACCACCACATGA 831 49.58 MDDNVTFNNNNHQFFSADQLEDSDESKPAPDSPPPNSAAAATATKKGRRGMKKKVLSVKINGDNPRNSSGSTTPPSDAWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLLITYSCEHNHSGPVSRNNNSNHNQTDAVKPDSPETVPVEVEEKFVEIVGEESLITGDEFSWFGEMETTSSTVLESSIFSGRASSGLVDHSISSDVAMLLPMGDDDMDESLFADLGELPECSLVFRRGGGRGLPVDEQPAAAQRRITPWCGTTT 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8466093 8467094 - ClCG03G007470.1 Cla03g00699 269199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00699 276 SMART WRKY_cls 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g00699 276 MobiDBLite consensus disorder prediction 134 160 - -
Cla03g00699 276 MobiDBLite consensus disorder prediction 1 79 - -
Cla03g00699 276 SUPERFAMILY WRKY DNA-binding domain 72 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g00699 276 PANTHER OS01G0750100 PROTEIN 19 274 - -
Cla03g00699 276 MobiDBLite consensus disorder prediction 134 153 - -
Cla03g00699 276 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 19 274 IPR044810 GO:0003700
Cla03g00699 276 MobiDBLite consensus disorder prediction 61 76 - -
Cla03g00699 276 Pfam WRKY DNA -binding domain 77 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g00699 276 MobiDBLite consensus disorder prediction 1 17 - -
Cla03g00699 276 Gene3D WRKY domain 63 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g00699 276 ProSiteProfiles WRKY domain profile. 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00699 Cla-Chr3:8466093 Cla03g00810 Cla-Chr3:10213606 9.02E-35 dispersed
Cla03g00699 Cla-Chr3:8466093 Cla07g00246 Cla-Chr7:2705874 2.35E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60808 PF03106 WRKY 6.90E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00699 - - csv:101203902 448.358