Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00703 ATGTCGGAGGCGCCACCGAGACGACTAAGAGGTCACAAAGGCACTGCCACGTGCTGCATCGCCTCGAATGACCGTCCTGGCCTCGTCGCTACTTCAGGCGAGGATGGTTATGTTTGCTGGTTTGACATGAGATGCAAAGATGTCGTATCCATTATGGAAGTAGGAAAAGAACCCATTTCATCCATATGTTTCAAGCCAGGGAATGAAGATGTTATTTACATCTCGTCTGGGAAGGAAATTAAGTCATTTGATGTCCATCAGGCCACATCATCAAAACCGTTGGGGAGTTATAGTTACAACAAAGAGGAGATAAATCAGGTTTCTTGTAGCTCCAAAGCTTCTTTTCTGGCTGCCGCTGATGATAGTGGTGATGTTAAGATCATTGATATTCACAATAATTGCCTATATAAAACATTAAGATCTGGCCATACAAGTATTTGTAGCAGTGTTCAGTTCCTTCCTTGGAGACCCTGGGAAGTTATTACAGGAGGACTTGATTCAAAGCTCATTATGTGGGACTTTTCCAGAGGACGCCCCATCAAAGTACTTGATTTTGATATCCCTGCCAACAACCCTTCCAGCAACACGGGACAATGTTTCAATCCTGCATTTGTTCATGCAATAGCAGTTCCTGAAGTTAATATGCTGGACAAAACAGGCCAGATATGTGTCGTTGCAAGGGGGGATGGTATTGTTCATGTGATTGATATTGAATCTGAGAAATTGAAGATTTCCTCAAAAACTGGTAAAAGAACACAAACAAGATCTAAGGGAGTTTCAGCGGCTTGTGATATGGATAACCAAACGCAAACTGGAAGAAAGAGGTTATATTTGGATTACACTGTTGGTGGACATTCTGCTGCTGTGTCCTGTGTGGCGTTTTCTCAATTTGGAGAGAAAGGGAAGTTCATAGTTTCTGGTGGGAATGATAGATGCATAAAGCTTTGGAATTGGTGTGGAGTTCCTGATGCTGGGGAAACTAGCAGCAGCAACAACGATATTCTTCATTTGAACATCAATCTGAGCAAAAAGGTGAATTGGCTTTGTACTACTCCATCTGAATCAGAAAACCTTATCGTTTGTGATACCAGCAAAGTAGTGAAGATCCTTAAGAATAACAATTTTGAGTCTAAGAGTAGGCATTTGCTGAGAATCACCACCAAATATTACCTTCCTGACAAGGTGCAGCATCCTCCTATCTCCAGGAATCAACATTTCACCTTCATCCAAGCAAAAATTGATCGAAAGAAGAAGATTCAAACTCCAGTGAGAAGCGCACTTCAATTTGAAGATTCACAGACTCTGGAGTTGCTTGCATTTGTGTGGGGTTGCTTTTCCAGTTTCTCCTGTAGCGGTTTGGTTGGTGCACAATCGTCTATGGGTGAAACCAACTTCCCAACCTCTCTCATCTTTCCAACTACTACCCTCCATTCTTCCCCATTTCTAAAATGCTTTCACCCTCCTTCTCGCACAGATCGATACAACCCATCTGGAATCAGGTGTCCGAAGAAAGGGCAAGTGAGAAACAGGATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAACCAGTCGGGGTTGATGGCAATGGAGAGGTTTTCGTTGCTTGCCATGAGTGCCATTTTCCTATTTGTAGAGTCTGCGTTCAGTATGATATTAAGGAAGGTCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGACGAGAACTTGCTGATGGATGCTGATACGAAGAGATCAGGAGATCGAAACACAATGGAATCTCATCTCAGTCATTCTCAGGACGTTGGAGTTCATGCTAGACATGTCAGTAGTGTGTCGACAGTGGATAGTGAATTGAATGATGAATCCGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAACGGCCTACTGTGAAGACTGAACAGGAAGCTCAAATACCTCCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGAGATTGCAGTTACACACTCATTTTCTTCAGTTTATCCAATTCCGTCCAGCAGATTAACACCATACAGAATTGTGATAATCATGCGATTGATCATTCTAGCCCTTTTCTTTCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTCTCCCGTCTGCAGAGACACATTCATTGACAGATTATCAGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAACTTGCTGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAGGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAATCTCTAGTTGAAACAGCTGACTTTGCAAGAATGTGGGTTCCATTCTGCAAGAAGTTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATTGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCCTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCGAAGGCTCAGAAAACGCCAGACGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACGTAGAGGGTAATGAACTTCCTCGACTGGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTGAGAGTATCAGCAGTCCTCACAAACGCCCCATTCATTCTCAACCTTGACTGTGATCATTATGTTAACAATAGCCAAGCTATACGCGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATACGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGCATCCAGGGACCAGTTTACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTATGGACCTCCTACTCTGCCTAGCTTATCTAAGACGACATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGGTCTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAATCTAAGGGAAATAGATAATTATGATGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCCTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATTAAAGAAGCAATTCATGTCATTGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCGTGAGGCCAGCATTCAAAGGATCAGCACCGATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGTAGACATTGTCCATTGTGGTATGGATTCGCAGGCGGTCGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTCATTGCCTACTGCTCATTGCCTGCAATCTGCCTGCTGACAGGAAAATTTATCATACCAACGCTCTCAAACCTAGCAAGTACCCTGTTTCTTGGTCTCTTCTTGTCCATCATTCTCACAAGTGTCCTCGAGCTGCGTTGGAGCGGTGTTAGCATCGAAGATATATGGCGTAACGAGCAATTTTGGGTCATAGGAGGCGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTGGCTGGCATCGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACGCTGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTCATTGTCGTTAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCTTGGGGACCTCTTTTTGGCAAGGTCTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTGTGGTCAGTACTGTTGGCATCAGTTTTCTCACTTGTTTGGGTGAAGATCAACCCATTTGTGAACCAAGTTGACAGTACAGCCGTTGCACAAAGCTGCATTGCCATAGATTGTTAG 4485 43.84 MSEAPPRRLRGHKGTATCCIASNDRPGLVATSGEDGYVCWFDMRCKDVVSIMEVGKEPISSICFKPGNEDVIYISSGKEIKSFDVHQATSSKPLGSYSYNKEEINQVSCSSKASFLAAADDSGDVKIIDIHNNCLYKTLRSGHTSICSSVQFLPWRPWEVITGGLDSKLIMWDFSRGRPIKVLDFDIPANNPSSNTGQCFNPAFVHAIAVPEVNMLDKTGQICVVARGDGIVHVIDIESEKLKISSKTGKRTQTRSKGVSAACDMDNQTQTGRKRLYLDYTVGGHSAAVSCVAFSQFGEKGKFIVSGGNDRCIKLWNWCGVPDAGETSSSNNDILHLNINLSKKVNWLCTTPSESENLIVCDTSKVVKILKNNNFESKSRHLLRITTKYYLPDKVQHPPISRNQHFTFIQAKIDRKKKIQTPVRSALQFEDSQTLELLAFVWGCFSSFSCSGLVGAQSSMGETNFPTSLIFPTTTLHSSPFLKCFHPPSRTDRYNPSGIRCPKKGQVRNRMMVSDVPICHTCGEPVGVDGNGEVFVACHECHFPICRVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDRNTMESHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAQIPPQQQMEEKQISEEIAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDVEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKTTSSSSCSWCGCCSCCCPSKKVSKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTAVAQSCIAIDC 1494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8508929 8530362 + ClCG03G007500.2 Cla03g00703 269203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00703 1494 SUPERFAMILY WD40 repeat-like 5 371 IPR036322 GO:0005515
Cla03g00703 1494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 317 - -
Cla03g00703 1494 Pfam Zinc-binding RING-finger 517 568 IPR027934 -
Cla03g00703 1494 Gene3D - 216 417 IPR015943 GO:0005515
Cla03g00703 1494 SUPERFAMILY Nucleotide-diphospho-sugar transferases 779 1292 IPR029044 -
Cla03g00703 1494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 503 592 IPR013083 -
Cla03g00703 1494 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 182 IPR001680 GO:0005515
Cla03g00703 1494 MobiDBLite consensus disorder prediction 627 657 - -
Cla03g00703 1494 Pfam Cellulose synthase 765 1484 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cla03g00703 1494 Gene3D - 1 194 IPR015943 GO:0005515
Cla03g00703 1494 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 915 1057 IPR029044 -
Cla03g00703 1494 SMART WD40_4 132 173 IPR001680 GO:0005515
Cla03g00703 1494 SMART WD40_4 45 84 IPR001680 GO:0005515
Cla03g00703 1494 SMART WD40_4 2 42 IPR001680 GO:0005515
Cla03g00703 1494 SMART WD40_4 90 129 IPR001680 GO:0005515
Cla03g00703 1494 SMART WD40_4 275 317 IPR001680 GO:0005515
Cla03g00703 1494 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 512 1494 - -
Cla03g00703 1494 ProSitePatterns Trp-Asp (WD) repeats signature. 160 174 IPR019775 -
Cla03g00703 1494 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 512 1494 - -
Cla03g00703 1494 MobiDBLite consensus disorder prediction 579 598 - -
Cla03g00703 1494 Pfam WD domain, G-beta repeat 281 317 IPR001680 GO:0005515
Cla03g00703 1494 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 317 IPR001680 GO:0005515
Cla03g00703 1494 SUPERFAMILY RING/U-box 507 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00703 Cla-Chr3:8508929 Cla06g00135 Cla-Chr6:1519844 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00703 K10999 - csv:101208988 1956.8