Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00724 ATGGTGATGGGAGAGAGAAAGAATAATAATGAAGATCAATACGAAGGTGGAATTAAGCTGTTTGGGGCAACAATTATGTTGCAAAATAACAGGCAAATCAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCCAATAAATCAGATCAGCAATCACTAGAAAAAAGGCCTGAGAAGATCATCCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAGCCAAGGCATTTCTGTAAGGGCTGCCAAAGGTATTGGACTGCCGGCGGGGCCCTTCGCAACGTCCCCGTCGGAGCCGGCCGTCGCAAAACCAAGCCCCCTTGTCGGACCTTCGCTGGCTTGCCGGAAAATTGTGTCTTTGATTCTTCAGGGATCGTTGCGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGGAGTGGCATGTCGTCGCTGCCACCGCCACACAAGGCGGTTTTCGACAAATTTTACCGGTAAAGCGGCGGAGGGATTGCCAAGATGGCCAAACTTGTTGA 540 47.41 MVMGERKNNNEDQYEGGIKLFGATIMLQNNRQIKEEEEEEEEEEANKSDQQSLEKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAATATQGGFRQILPVKRRRDCQDGQTC 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8848676 8849215 + ClCG03G007720.1 Cla03g00724 269224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00724 179 MobiDBLite consensus disorder prediction 30 56 - -
Cla03g00724 179 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Cla03g00724 179 PANTHER CYCLIC DOF FACTOR 2 14 172 IPR045174 GO:0003700|GO:0006355
Cla03g00724 179 Coils Coil 23 54 - -
Cla03g00724 179 Pfam Dof domain, zinc finger 59 114 IPR003851 GO:0003677|GO:0006355
Cla03g00724 179 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 14 172 - -
Cla03g00724 179 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02318 Cla03g00724 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00724 Cla-Chr3:8848676 Cla10g01519 Cla-Chr10:30481283 3.53E-37 dispersed
Cla01g02318 Cla-Chr1:36975364 Cla03g00724 Cla-Chr3:8848676 2.15E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60810 PF02701 zf-Dof 6.20E-32 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00724 - - csv:101204978 334.724