Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00748 ATGCTTCTCCACCCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCCTCTCAAACCCTTCTCTTCTCTCCTTCTCTCTAACCCAAGAAGGCCTCTATCTCCACTCCATCAAGCTCTCTCTCGACGACCCAGATTCCTCTCTCCGCTCATGGAACGACCGCGACGACACTCCTTGTTCCTGGTTCGGCGTTTCTTGCGACCCTCAAACCAACTCCGTTCACTCTCTCGACCTCTCTAACACCAACATCGCCGGCCCATTTCCTTCTCTCCTTTGCCGTCTCCAGAATCTCTCATTCCTCTCCCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCCGACTGTACCAGTCTCCTCCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGCGCTTCCTAGCTCGATTGCCGATCTCCCCAACCTTCAGTACTTGGATTTGACAGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCTCGGTTTCGGAACTTGGAAGTTCTGTCGCTTGTTTATAATCTTCTCGATGGGCCGATGCCGGCGTTTCTCGGCAACATTACGTCATTGAAGATGTTGAACCTGTCTTATAACCCGTTTGTGCCGAGCCGGATCCCGCCGGAGTTCGGGAATTTGACGAATCTTGAGGTGCTCTGGTTGACTCAGTGTAATTTGGTTGGGGAAATTCCGCAGTCTTTTGGTCGGTTGAAGCGGCTTACCGATTTGGACTTGGCGTTGAATAATCTTGAAGGTCCGATTCCGAAGTCGCTCACGGAGTTGAGTAGCGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACTGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGGGCGATTCCGGATGAGTTGTGTCAATTGCCGCTTGAGAGTCTCAATCTCTACGAGAACAAGTTTGAAGGGAAATTACCGGAAAGCATTGCCAACTCGCGGGGTTTGTACGAACTCAGACTGTTCAGTAACCAGCTCACTGGCGAGTTACCGCGAAATCTTGGAAAGAACTCGCCGTTGNTGTCGCTGGGTCTGAGCAGGAGTCGTCTTCACCCTCAAACCCTAAACCCTTCCATTTCCATTTCCATTTCTCACAGAGAAGCACCAACAATGCTTCTCCACCCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCCTCTCAAACCCTTCTCTTCTCTCCTTCTCTCTAACCCAAGAAGGCCTCTATCTCCACTCCATCAAGCTCTCTCTCGACGACCCAGATTCCTCTCTCCGCTCATGGAACGACCGCGACGACACTCCTTGTTCCTGGTTCGGCGTTTCTTGCGACCCTCAAACCAACTCCGTTCACTCTCTCGACCTCTCTAACACCAACATCGCCGGCCCATTTCCTTCTCTCCTTTGCCGTCTCCAGAATCTCTCATTCCTCTCCCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCCGACTGTACCAGTCTCCTCCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGCGCTTCCTAGCTCGATTGCCGATCTCCCCAACCTTCAGTACTTGGATTTGACAGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCTCGGTTTCGGAACTTGGAAGTTCTGTCGCTTGTTTATAATCTTCTCGATGGGCCGATGCCGGCGTTTCTCGGCAACATTACGTCATTGAAGATGTTGAACCTGTCTTATAACCCGTTTGTGCCGAGCCGGATCCCGCCGGAGTTCGGGAATTTGACGAATCTTGAGGTGCTCTGGTTGACTCAGTGTAATTTGGTTGGGGAAATTCCGCAGTCTTTTGGTCGGTTGAAGCGGCTTACCGATTTGGACTTGGCGTTGAATAATCTTGAAGGTCCGATTCCGAAGTCGCTCACGGAGTTGAGTAGCGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACTGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGGGCGATTCCGGATGAGTTGTGTCAATTGCCGCTTGAGAGTCTCAATCTCTACGAGAACAAGTTTGAAGGGAAATTACCGGAAAGCATTGCCAACTCGCGGGGTTTGTACGAACTCAGACTGTTCAGTAACCAGCTCACTGGCGAGTTACCGCGAAATCTTGGAAAGAACTCGCCGTTGAGATGGATGGATGTTTCCAACAACCAGTTTACGGGTGAAATCCCGGGGAATTTGTGTGAGAAGGGAGAGTTGGAGGAACTTCTGATGATCAACAACCAGTTTTCCGGCGAGATTCCGGCAAGCTTAGGTTCGTGCCAGAGTCTTACGAGGGTACGATTGGGTTATAATCTATTATCCGGCGAGGTACCGGCGGGATTTTGGGGCCTCCCACATGTGTATCTGTTGGAGCTGGTGAGTAACTCGTTTTCTGGGAAGATTTCGGATGCCATTGCCACTGCTAAGAACCTTTCGATTTTCATTATCTCTAAGAACAACTTCACCGGCACACTACCGACGGAGATGGGACGGCTGGAAAATCTTGTGAAGTTGCTAGCGACGGATAACAAACTAACTGGGTCACTACCAGGGAGTCTTGTGAATCTTAGGCATCTTTCGAGTTTAGATCTTCGGAATAATGAACTCTCTGGGGAACTTCCCAGTGGAATCAAATCGTGGAAGAATCTCAACGAACTCAATTTAGCAAACAATGAATTCACCGGTGAAATCCCCGAAGAAATCGGAAACTTGCCTGTTCTTAATTACCTTGATCTGTCTGGAAATCTGTTTTCTGGGGATGTCCCTCTTGGGTTACAGAATTTGAAGCTCAATCTACTCAATTTATCTTACAATCACTTGTCAGGTGAGCTTCCTCCATTTTTAGCTAAGGAAATCTACAGAAACAGCTTTTTGGGGAATCCAGATTTGTGTGGACATTTCGAAAGTTTGTGCAACAGCAAAGGTGAAGCTAAAAGCCAAGGCTCTCTCTGGTTGCTGCGTTCAATCTTCGTCCTTGCCGGTATCGTGTTCATCGTTGGTGTCATCTGGTTTTACCTCAAGTACAGGAAGTTTAAGATGGCAAAGAAAGAAATGGAGAAGAGCAAATGGACATTAATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGAATCCCTTGATGAAGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAAGTTGTGCTCAACAATGGTGAGGCTGTTGCAGTGAAGAAACTGTTTGGAGGGATGAGGAAAGACAGCGAAAAAGGCGATATCGAGAAGGGTCAAGTTCAAGACAATGCCTTCGAAGCCGAAATCGACACTCTGGGAAAGATTAGGCACAAAAACATTGTGAAGTTATGGTGCTGCTGTGTTACAAGAGACTACAAGCTTTTAGTCTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGATTGCTTGATTGGCCTACTAGGTTTAAGATAGCTTTAGATGCTGCAGAAGGACTTTCTTATCTTCACCACGATTGCGTCCCTCCAATCGTTCATCGCGACGTTAAGTCAAACAACATCTTGTTGGATGGCGATTTCGGAGCACGGTTAGCAGATTTCGGTGTAGCTAAAGTCATTGATTCAACCGGGAAAGGGCCTAAATCCATGTCGGTAATTGCAGGATCTTGCGGTTACATTGCGCCTGAGTATGCTTACACACTCCGAGTGAATGAAAAAAGCGATATATACAGTTTCGGCGTGGTGATTCTCGAGCTAATAACTGGGAGGCTCCCGGTCGATCCGGAGTTCGGAGAGAAGGACCTAGTGAAATGGGTGTGTTTCACATTGGATCAAGATGGGATCGATCAAGTGATCGACCGGAAACTGGATAGCTGTTTCAAGGAGGAAATATGCAGAGTCCTTAACATTGGGTTGCTTTGCACTAGCCCACTTCCCATCAACCGGCCATCAATGAGAAAAGTGGTGAAAATGCTGCAAGAAGTTGGGGCAGAGAACCAATTGAAAAGCAACAACAAAGATGGAAAGTTAACTCCTTACTATTATGAAGATGCATCAGATCAGGGAAGTGTAGCTTAG 4185 47.07 MLLHPFFFFFFFFFFIFLSNPSLLSFSLTQEGLYLHSIKLSLDDPDSSLRSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSVISDCTSLLHLDLSQNLLTGALPSSIADLPNLQYLDLTGNNFSGDIPESFARFRNLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFVPSRIPPEFGNLTNLEVLWLTQCNLVGEIPQSFGRLKRLTDLDLALNNLEGPIPKSLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGAIPDELCQLPLESLNLYENKFEGKLPESIANSRGLYELRLFSNQLTGELPRNLGKNSPLXSLGLSRSRLHPQTLNPSISISISHREAPTMLLHPFFFFFFFFFFIFLSNPSLLSFSLTQEGLYLHSIKLSLDDPDSSLRSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSVISDCTSLLHLDLSQNLLTGALPSSIADLPNLQYLDLTGNNFSGDIPESFARFRNLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFVPSRIPPEFGNLTNLEVLWLTQCNLVGEIPQSFGRLKRLTDLDLALNNLEGPIPKSLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGAIPDELCQLPLESLNLYENKFEGKLPESIANSRGLYELRLFSNQLTGELPRNLGKNSPLRWMDVSNNQFTGEIPGNLCEKGELEELLMINNQFSGEIPASLGSCQSLTRVRLGYNLLSGEVPAGFWGLPHVYLLELVSNSFSGKISDAIATAKNLSIFIISKNNFTGTLPTEMGRLENLVKLLATDNKLTGSLPGSLVNLRHLSSLDLRNNELSGELPSGIKSWKNLNELNLANNEFTGEIPEEIGNLPVLNYLDLSGNLFSGDVPLGLQNLKLNLLNLSYNHLSGELPPFLAKEIYRNSFLGNPDLCGHFESLCNSKGEAKSQGSLWLLRSIFVLAGIVFIVGVIWFYLKYRKFKMAKKEMEKSKWTLMSFHKLDFSEYEILESLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKDSEKGDIEKGQVQDNAFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVIDSTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPVDPEFGEKDLVKWVCFTLDQDGIDQVIDRKLDSCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQLKSNNKDGKLTPYYYEDASDQGSVA 1394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9083328 9087936 - ClCG03G007990.1 Cla03g00748 269248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00748 1394 Pfam Protein kinase domain 1083 1301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00748 1394 Gene3D Transferase(Phosphotransferase) domain 1 1169 1388 - -
Cla03g00748 1394 Pfam Leucine rich repeat 536 595 IPR001611 GO:0005515
Cla03g00748 1394 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515
Cla03g00748 1394 Gene3D Ribonuclease Inhibitor 205 387 IPR032675 -
Cla03g00748 1394 Gene3D Ribonuclease Inhibitor 597 772 IPR032675 -
Cla03g00748 1394 Gene3D Ribonuclease Inhibitor 419 596 IPR032675 -
Cla03g00748 1394 Gene3D Ribonuclease Inhibitor 27 204 IPR032675 -
Cla03g00748 1394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1213 1225 IPR008271 GO:0004672|GO:0006468
Cla03g00748 1394 SMART LRR_typ_2 487 511 IPR003591 -
Cla03g00748 1394 SMART LRR_typ_2 95 119 IPR003591 -
Cla03g00748 1394 SMART LRR_typ_2 288 312 IPR003591 -
Cla03g00748 1394 SMART LRR_typ_2 680 704 IPR003591 -
Cla03g00748 1394 SMART LRR_typ_2 608 632 IPR003591 -
Cla03g00748 1394 SMART LRR_typ_2 535 558 IPR003591 -
Cla03g00748 1394 SMART LRR_typ_2 216 240 IPR003591 -
Cla03g00748 1394 SMART LRR_typ_2 143 166 IPR003591 -
Cla03g00748 1394 SMART LRR_typ_2 895 918 IPR003591 -
Cla03g00748 1394 SMART LRR_typ_2 583 607 IPR003591 -
Cla03g00748 1394 SMART LRR_typ_2 191 215 IPR003591 -
Cla03g00748 1394 SUPERFAMILY Protein kinase-like (PK-like) 1072 1361 IPR011009 -
Cla03g00748 1394 SUPERFAMILY L domain-like 428 769 - -
Cla03g00748 1394 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Cla03g00748 1394 Pfam Leucine rich repeat N-terminal domain 422 460 IPR013210 -
Cla03g00748 1394 Gene3D Phosphorylase Kinase; domain 1 1045 1168 - -
Cla03g00748 1394 SMART serkin_6 1081 1347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00748 1394 Gene3D Ribonuclease Inhibitor 870 1010 IPR032675 -
Cla03g00748 1394 Gene3D Ribonuclease Inhibitor 773 869 IPR032675 -
Cla03g00748 1394 SMART LRR_sd22_2 119 145 - -
Cla03g00748 1394 SMART LRR_sd22_2 511 537 - -
Cla03g00748 1394 SMART LRR_sd22_2 240 266 - -
Cla03g00748 1394 SMART LRR_sd22_2 632 658 - -
Cla03g00748 1394 SMART LRR_sd22_2 895 924 - -
Cla03g00748 1394 SMART LRR_sd22_2 487 504 - -
Cla03g00748 1394 SMART LRR_sd22_2 95 112 - -
Cla03g00748 1394 SUPERFAMILY RNI-like 663 997 - -
Cla03g00748 1394 ProSitePatterns Protein kinases ATP-binding region signature. 1087 1110 IPR017441 GO:0005524
Cla03g00748 1394 SUPERFAMILY L domain-like 37 373 - -
Cla03g00748 1394 ProSiteProfiles Protein kinase domain profile. 1081 1364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00748 1394 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 15 372 - -
Cla03g00748 1394 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 15 372 - -
Cla03g00748 1394 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 407 1374 - -
Cla03g00748 1394 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 407 1374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00748 Cla-Chr3:9083328 Cla08g01205 Cla-Chr8:24958351 5.16E-76 dispersed
Cla02g00229 Cla-Chr2:2383335 Cla03g00748 Cla-Chr3:9083328 1.46E-29 transposed
Cla10g00774 Cla-Chr10:14594346 Cla03g00748 Cla-Chr3:9083328 2.04E-103 transposed
Cla01g02278 Cla-Chr1:36660917 Cla03g00748 Cla-Chr3:9083328 5.54E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80436 PF00069 Pkinase 2.70E-43 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00748 - - csv:101213542 1824.29