Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00810 ATGTTCTGTAGTTTGTTTGAGATGGACAACAATTATCAGCAAGCTGGTGATTTGACTGATGTAATTCGACTCAGTTCCGCCGCCGTTGCCGGTGGCCTCTCATCGGAATTCTCTCTCGACCCTTCTTCCAGTGACCGACGACTCTGGCCTCACCTAACCGCCGATGAATCTTCAATGAATTTTGGAGATCCGTTGTTGTTTCCGACTAGTAGTGCTCGAGATCCGTTTCTTCATCCTCATTTTTCTGCCTTCAATTTAGCTTCTGACGGCGGCAGTGAGGGTTTGGCGGCGGTGGACCAGCCGTCTAATTTACTTTCACATATGTTGCAGATCTCTCCGAGTTCCGGTGATGGTGTAATTAGTACTCCTCCATGTGAGTCGTTCGCCACGGCGGTGGGGAATTCTCCGTGCTCGGCTTCAGCTTGCAGTGGCGGTGTCGTGCTTCCGACCGGTGGCTCGAATCCTCTTTGTTTAATGGAGAATTCTGGGATTCAGATCTCTTCCCCACGTAATTCCACCACTAAAAGAAGGAAGAGCCAAGTGAAGAAGGTGGTGTGCATTCCGGCACCGGCACCGGCGAACAACCGATCAAGCAGCGGTGAAGTGGTTCCTTCTGATCTATGGGCATGGAGGAAGTACGGACAAAAGCCCATCAAAGGATCCCCATATCCAAGGGGATATTATAGGTGCAGTAGCTCAAAGGGCTGCTCCGCTCGAAAGCAGGTCGAGCGCAGTCGAACCAACCCCAACATGCTTGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCCACTCAACGCAATGCTCTTGCAGGCTCAACACGCTCCCACCCTTCTCGAACCCCTACCACCCCCACCGCTCGTAAAACAAGCCCAAAACACGAGCGCACCAACAACAACCAACCAACCACAACACTAAAGGAGGAAGAGATGGATGCAGACCAAACGACAGAAAAAGCAATAGTAACAACAACAAACGATCATCAGGAAGATGGAGATCATCAGAATTTCCCTTATGACTTAATTTTCACTGAATTTGCTGACCATGACAACGACCACGACCATCATCATCTTTCAGCAGACCCTCTAAACAACATCATCTTTAGTAGCCATGGCTTTAGTACAGGAAATGGAGAAGGGAGTAAAGATCCATTTTTGGAGCTCTATGATTGGGCAGATAATTCAAATGGAAGTTTGTTCAAAGAAGCCAAGGGAGGTTGA 1224 49.26 MFCSLFEMDNNYQQAGDLTDVIRLSSAAVAGGLSSEFSLDPSSSDRRLWPHLTADESSMNFGDPLLFPTSSARDPFLHPHFSAFNLASDGGSEGLAAVDQPSNLLSHMLQISPSSGDGVISTPPCESFATAVGNSPCSASACSGGVVLPTGGSNPLCLMENSGIQISSPRNSTTKRRKSQVKKVVCIPAPAPANNRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTNPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTPTTPTARKTSPKHERTNNNQPTTTLKEEEMDADQTTEKAIVTTTNDHQEDGDHQNFPYDLIFTEFADHDNDHDHHHLSADPLNNIIFSSHGFSTGNGEGSKDPFLELYDWADNSNGSLFKEAKGG 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10213606 10217346 + ClCG03G008580.1 Cla03g00810 269310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00810 407 Gene3D WRKY domain 177 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g00810 407 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 100 395 IPR044810 GO:0003700
Cla03g00810 407 Pfam WRKY DNA -binding domain 206 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g00810 407 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 100 395 - -
Cla03g00810 407 MobiDBLite consensus disorder prediction 259 314 - -
Cla03g00810 407 SUPERFAMILY WRKY DNA-binding domain 202 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g00810 407 SMART WRKY_cls 204 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g00810 407 MobiDBLite consensus disorder prediction 259 289 - -
Cla03g00810 407 ProSiteProfiles WRKY domain profile. 199 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g02476 Cla03g00810 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02476 Cla-Chr1:38417034 Cla03g00810 Cla-Chr3:10213606 2.46E-67 dispersed
Cla03g00699 Cla-Chr3:8466093 Cla03g00810 Cla-Chr3:10213606 9.02E-35 dispersed
Cla03g00810 Cla-Chr3:10213606 Cla07g00748 Cla-Chr7:20890213 1.02E-36 dispersed
Cla09g00705 Cla-Chr9:6879887 Cla03g00810 Cla-Chr3:10213606 5.71E-28 dispersed
Cla09g00706 Cla-Chr9:6895715 Cla03g00810 Cla-Chr3:10213606 5.71E-28 dispersed
Cla03g00810 Cla-Chr3:10213606 Cla05g00141 Cla-Chr5:1297484 3.85E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60820 PF03106 WRKY 4.10E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00810 - - bhj:120083610 682.559