Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00820 | ATGGCACTTGCAAATTCAGCTCTACAAGAACTGGATGGCATGGAGAAAAATGGTGGTTATTTGAAGACTTTAGCCATTGGAAAAGGCCATGAAAATCCAAATAGTAACTTCGTGTTTCGAAACACAACGAATTACCAACTCGATCAACAACAGCAGCAGCAGCAGCAGCAACAGTCTCTCATCAACTTCAAGTGTGGGATTGACAATACTATTTTGGGTGATAAGATGAATAACAATGAATCTTTGTTGAGCTTTGACGCACAAGGGATTTGTCAATTAGATCAAACTTACAATTGGGATGATCAGCAACGTGTGATGGAGGATCCTAATTGCTTTCAAACAGCTACCAATCACAATAATTATAGCCCTTCAAAAGATCACCATAATAAAAATGGAGATAATGGATCTGTTTATGAGTGGCTTTATTCTGAACCAACTACTCATTTTTCTGATGCCATTCAAGAAGCTGAAGCAACTCAAGAGATTATTGCCAATCACAAACGATCCCATACGGGGGAGAGCAGTGGGAGTGTTTGTAAGAAGCAATGCACTGTTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGCTGAAGATATTGCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGCTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCTGTTGAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGTTCAAACAGTGAGAAGTGA | 882 | 40.25 | MALANSALQELDGMEKNGGYLKTLAIGKGHENPNSNFVFRNTTNYQLDQQQQQQQQQQSLINFKCGIDNTILGDKMNNNESLLSFDAQGICQLDQTYNWDDQQRVMEDPNCFQTATNHNNYSPSKDHHNKNGDNGSVYEWLYSEPTTHFSDAIQEAEATQEIIANHKRSHTGESSGSVCKKQCTVAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVEGGKAPDISQVKEAIDVILSSQRERSSSSNSEK | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10472168 | 10474835 | - | ClCG03G008680.1 | Cla03g00820 | 269320 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00820 | 293 | Pfam | Helix-loop-helix DNA-binding domain | 203 | 246 | IPR011598 | GO:0046983 | |
Cla03g00820 | 293 | Gene3D | - | 189 | 253 | IPR036638 | GO:0046983 | |
Cla03g00820 | 293 | CDD | bHLH_AtIND_like | 197 | 259 | - | - | |
Cla03g00820 | 293 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 194 | 254 | IPR036638 | GO:0046983 | |
Cla03g00820 | 293 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 31 | 281 | - | - | |
Cla03g00820 | 293 | MobiDBLite | consensus disorder prediction | 189 | 208 | - | - | |
Cla03g00820 | 293 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 31 | 281 | - | - | |
Cla03g00820 | 293 | SMART | finulus | 202 | 251 | IPR011598 | GO:0046983 | |
Cla03g00820 | 293 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 196 | 245 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g00679 | Cla-Chr2:7836120 | Cla03g00820 | Cla-Chr3:10472168 | 1.53E-25 | dispersed | |
Cla03g00820 | Cla-Chr3:10472168 | Cla05g02102 | Cla-Chr5:32621736 | 2.08E-25 | dispersed | |
Cla03g00820 | Cla-Chr3:10472168 | Cla08g01617 | Cla-Chr8:28777277 | 9.88E-26 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60822 | PF00010 | HLH | 9.40E-08 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00820 | - | - | bhj:120092869 | 512.301 |