Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00820 ATGGCACTTGCAAATTCAGCTCTACAAGAACTGGATGGCATGGAGAAAAATGGTGGTTATTTGAAGACTTTAGCCATTGGAAAAGGCCATGAAAATCCAAATAGTAACTTCGTGTTTCGAAACACAACGAATTACCAACTCGATCAACAACAGCAGCAGCAGCAGCAGCAACAGTCTCTCATCAACTTCAAGTGTGGGATTGACAATACTATTTTGGGTGATAAGATGAATAACAATGAATCTTTGTTGAGCTTTGACGCACAAGGGATTTGTCAATTAGATCAAACTTACAATTGGGATGATCAGCAACGTGTGATGGAGGATCCTAATTGCTTTCAAACAGCTACCAATCACAATAATTATAGCCCTTCAAAAGATCACCATAATAAAAATGGAGATAATGGATCTGTTTATGAGTGGCTTTATTCTGAACCAACTACTCATTTTTCTGATGCCATTCAAGAAGCTGAAGCAACTCAAGAGATTATTGCCAATCACAAACGATCCCATACGGGGGAGAGCAGTGGGAGTGTTTGTAAGAAGCAATGCACTGTTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGCTGAAGATATTGCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGCTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCTGTTGAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGTTCAAACAGTGAGAAGTGA 882 40.25 MALANSALQELDGMEKNGGYLKTLAIGKGHENPNSNFVFRNTTNYQLDQQQQQQQQQQSLINFKCGIDNTILGDKMNNNESLLSFDAQGICQLDQTYNWDDQQRVMEDPNCFQTATNHNNYSPSKDHHNKNGDNGSVYEWLYSEPTTHFSDAIQEAEATQEIIANHKRSHTGESSGSVCKKQCTVAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVEGGKAPDISQVKEAIDVILSSQRERSSSSNSEK 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10472168 10474835 - ClCG03G008680.1 Cla03g00820 269320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00820 293 Pfam Helix-loop-helix DNA-binding domain 203 246 IPR011598 GO:0046983
Cla03g00820 293 Gene3D - 189 253 IPR036638 GO:0046983
Cla03g00820 293 CDD bHLH_AtIND_like 197 259 - -
Cla03g00820 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 254 IPR036638 GO:0046983
Cla03g00820 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 281 - -
Cla03g00820 293 MobiDBLite consensus disorder prediction 189 208 - -
Cla03g00820 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 281 - -
Cla03g00820 293 SMART finulus 202 251 IPR011598 GO:0046983
Cla03g00820 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00679 Cla-Chr2:7836120 Cla03g00820 Cla-Chr3:10472168 1.53E-25 dispersed
Cla03g00820 Cla-Chr3:10472168 Cla05g02102 Cla-Chr5:32621736 2.08E-25 dispersed
Cla03g00820 Cla-Chr3:10472168 Cla08g01617 Cla-Chr8:28777277 9.88E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60822 PF00010 HLH 9.40E-08 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00820 - - bhj:120092869 512.301