Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00839 | ATGGCCATAAGCGGGGGAAGAGAGGAGGAGGAGGAGGAAAGAAGCCGACGGCGGCCGGATTCGTCGGAGGAGGAGGAGGAGTATAACGTAGAGAGCGTTGGTGAAGGGATAAAGTCGTCGCGAGGGAGCCGGTTCAATCTGATTCAGAAACAGTTGAGGATTGAACGGAATCGCAGAAGATTTAGCCGCGAAAATCTCATTAATGGCATTAAGTGCCTCGTTATCCTCCCTGACAGCAGGTGGTATAGGGCTTGGACGAAGTTCATACTAGTATGGGCAGTGTACTCTTCCTTCTTCACACCCATGGAATTCGGATTCTTCCGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGACAAATTGCTTTCCTCTTTGACATTGTTTTCCAATTCTTCCTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCACTCAAGTACTTGAAATCCACCTTTGTGACTGATTTGCTCAGCTGTTTGCCCTGGGACATCATTTATAAGGCTTGTGGGAAGAGAGAAGAGGTGAGATACCTTCTATGGATAAGGTTATTTCGGGTGCGGAAAGTCGATGCCTTTTTTCAGACGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTCAAGCTACTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTGCTTCTGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTAGGGGACTACAGTTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCTATTGTAACCATGGCCACTGTTGGTTATGGAGATATACATGCAGTCAACTTAAGGGAAATGATATTCATTATGATTTATGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTAGCAGGGATATCCGTGATCAGATCAAGGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATCCCAATATCAATCCGTGCTAAGATTTCCCAATCATTGTACTTGCCTTATATTCAGAATGTTTCTCTCTTTAGAGGATGCTCCCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTGCCTGGAGAGGTGATAATGGAACAAGGAAATGTAGTTGATCAACTTTATTTTGTATGCCATGGTGTGCTGGAGGAAGTAGGAATAGGACAAGATGGTTCAGAAGAGACCATAGATTTACTACAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAACATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTATGTAGACTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGATGGGAGGAAAATCTTGAACAACCTTCTACAGGGAAAAGAAACGAACCTTCGAGTAAAGCAATTGGAGTCCGATATCACATTTCATATTGGTAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGTGATCTGTACCAATTAAAAGGCCTTGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGAGGATATAGTAGTTTTCCTTATTCAGGAAGGAGTAAACATTGACCTTAAAGATAATTTTGGCAATACACCATTATTGGAAGCCATCAAGAATGGGAACGATCAAGTTGCTGTTTTGCTTTCTAAACAAGGTGCTTCATTGAAGGTTGAAAATCCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGTGATTCGGATCTTCTAAAGAGATTATTGTGCTATGGCATTGATCCCAACTCCAAAGATTATGATTTCCGAACTCCACTACATATAGCTGCCTCAGAAGGGCTAACTTTGATGGCAAAATTGCTCTTAGAATCTGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAGGCCGAATTTGTGGAAATAAGAATATGCTTAAGCTCTTGGAAGAGGCAAGAGCTTCTCAGTTGTCAGAATCTCCTTATTCCTCTCGAGAATTCCCAGACAAAAAACACTCAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCGTGAAGAAAACAAAAGACCTGGAATTATGCTATGGGTTCCACTCACTATTGAAGAGCTGATCAAGGAATCATCAGAGCAGCTACAAGTTTCAGGTGAATGTTGTATATTATCAGAAGATGGGGGTAAAATTCTTGATGTCCATATGATTGATGAAAGTCAAAAGCTGTATCTAGTTCCTGAAACTCATTAA | 2490 | 41.33 | MAISGGREEEEEERSRRRPDSSEEEEEYNVESVGEGIKSSRGSRFNLIQKQLRIERNRRRFSRENLINGIKCLVILPDSRWYRAWTKFILVWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFLAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCLPWDIIYKACGKREEVRYLLWIRLFRVRKVDAFFQTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQSLYLPYIQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLQGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLLEAIKNGNDQVAVLLSKQGASLKVENPGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHIAASEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLLEEARASQLSESPYSSREFPDKKHSKKCTVFPFHPWDREENKRPGIMLWVPLTIEELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPETH | 829 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 11191629 | 11201478 | + | ClCG03G008880.1 | Cla03g00839 | 269339 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00839 | 829 | Gene3D | Jelly Rolls | 387 | 528 | IPR014710 | - | |
Cla03g00839 | 829 | Pfam | Ion transport protein | 83 | 328 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Cla03g00839 | 829 | ProSiteProfiles | Ankyrin repeat profile. | 677 | 709 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | Gene3D | - | 537 | 645 | IPR036770 | - | |
Cla03g00839 | 829 | ProSiteProfiles | Ankyrin repeat profile. | 580 | 612 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | PANTHER | POTASSIUM CHANNEL SKOR-LIKE | 7 | 828 | - | - | |
Cla03g00839 | 829 | SMART | ANK_2a | 613 | 642 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | SMART | ANK_2a | 677 | 706 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | SMART | ANK_2a | 580 | 609 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | SMART | ANK_2a | 644 | 673 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | SMART | ANK_2a | 710 | 739 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | PRINTS | EAG/ELK/ERG potassium channel family signature | 118 | 128 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cla03g00839 | 829 | PRINTS | EAG/ELK/ERG potassium channel family signature | 227 | 237 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cla03g00839 | 829 | PRINTS | EAG/ELK/ERG potassium channel family signature | 275 | 292 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cla03g00839 | 829 | PRINTS | EAG/ELK/ERG potassium channel family signature | 319 | 328 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cla03g00839 | 829 | PRINTS | Ankyrin repeat signature | 581 | 596 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | PRINTS | Ankyrin repeat signature | 693 | 707 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | ProSiteProfiles | Ankyrin repeat region circular profile. | 580 | 612 | - | - | |
Cla03g00839 | 829 | Pfam | KHA, dimerisation domain of potassium ion channel | 755 | 824 | IPR021789 | - | |
Cla03g00839 | 829 | Gene3D | - | 646 | 741 | IPR036770 | - | |
Cla03g00839 | 829 | SUPERFAMILY | Ankyrin repeat | 552 | 732 | IPR036770 | - | |
Cla03g00839 | 829 | SUPERFAMILY | Voltage-gated potassium channels | 77 | 328 | - | - | |
Cla03g00839 | 829 | SUPERFAMILY | cAMP-binding domain-like | 331 | 522 | IPR018490 | - | |
Cla03g00839 | 829 | Gene3D | Helix hairpin bin | 330 | 386 | - | - | |
Cla03g00839 | 829 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cla03g00839 | 829 | PANTHER | POTASSIUM CHANNEL AKT1 | 7 | 828 | IPR045319 | GO:0005249|GO:0006813 | |
Cla03g00839 | 829 | CDD | CAP_ED | 403 | 517 | IPR000595 | - | |
Cla03g00839 | 829 | ProSiteProfiles | KHA domain profile. | 756 | 829 | IPR021789 | - | |
Cla03g00839 | 829 | ProSiteProfiles | Ankyrin repeat region circular profile. | 677 | 709 | - | - | |
Cla03g00839 | 829 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 403 | 523 | IPR000595 | - | |
Cla03g00839 | 829 | SMART | cnmp_10 | 403 | 521 | IPR000595 | - | |
Cla03g00839 | 829 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cla03g00839 | 829 | ProSiteProfiles | Ankyrin repeat profile. | 613 | 645 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | Pfam | Cyclic nucleotide-binding domain | 423 | 507 | IPR000595 | - | |
Cla03g00839 | 829 | Gene3D | - | 85 | 329 | - | - | |
Cla03g00839 | 829 | Pfam | Ankyrin repeats (3 copies) | 650 | 730 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | Pfam | Ankyrin repeats (3 copies) | 555 | 642 | IPR002110 | GO:0005515 | |
Cla03g00839 | 829 | ProSiteProfiles | Ankyrin repeat region circular profile. | 613 | 644 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00839 | Cla-Chr3:11191629 | Cla06g01070 | Cla-Chr6:23198647 | 8.16E-124 | dispersed | |
Cla09g02157 | Cla-Chr9:39215083 | Cla03g00839 | Cla-Chr3:11191629 | 3.59E-06 | dispersed | |
Cla03g00839 | Cla-Chr3:11191629 | Cla01g02349 | Cla-Chr1:37242729 | 1.60E-14 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00839 | K21867 | - | csv:101210912 | 1546.56 |