Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00839 ATGGCCATAAGCGGGGGAAGAGAGGAGGAGGAGGAGGAAAGAAGCCGACGGCGGCCGGATTCGTCGGAGGAGGAGGAGGAGTATAACGTAGAGAGCGTTGGTGAAGGGATAAAGTCGTCGCGAGGGAGCCGGTTCAATCTGATTCAGAAACAGTTGAGGATTGAACGGAATCGCAGAAGATTTAGCCGCGAAAATCTCATTAATGGCATTAAGTGCCTCGTTATCCTCCCTGACAGCAGGTGGTATAGGGCTTGGACGAAGTTCATACTAGTATGGGCAGTGTACTCTTCCTTCTTCACACCCATGGAATTCGGATTCTTCCGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGACAAATTGCTTTCCTCTTTGACATTGTTTTCCAATTCTTCCTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCACTCAAGTACTTGAAATCCACCTTTGTGACTGATTTGCTCAGCTGTTTGCCCTGGGACATCATTTATAAGGCTTGTGGGAAGAGAGAAGAGGTGAGATACCTTCTATGGATAAGGTTATTTCGGGTGCGGAAAGTCGATGCCTTTTTTCAGACGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTCAAGCTACTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTGCTTCTGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTAGGGGACTACAGTTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCTATTGTAACCATGGCCACTGTTGGTTATGGAGATATACATGCAGTCAACTTAAGGGAAATGATATTCATTATGATTTATGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTAGCAGGGATATCCGTGATCAGATCAAGGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATCCCAATATCAATCCGTGCTAAGATTTCCCAATCATTGTACTTGCCTTATATTCAGAATGTTTCTCTCTTTAGAGGATGCTCCCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTGCCTGGAGAGGTGATAATGGAACAAGGAAATGTAGTTGATCAACTTTATTTTGTATGCCATGGTGTGCTGGAGGAAGTAGGAATAGGACAAGATGGTTCAGAAGAGACCATAGATTTACTACAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAACATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTATGTAGACTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGATGGGAGGAAAATCTTGAACAACCTTCTACAGGGAAAAGAAACGAACCTTCGAGTAAAGCAATTGGAGTCCGATATCACATTTCATATTGGTAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGTGATCTGTACCAATTAAAAGGCCTTGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGAGGATATAGTAGTTTTCCTTATTCAGGAAGGAGTAAACATTGACCTTAAAGATAATTTTGGCAATACACCATTATTGGAAGCCATCAAGAATGGGAACGATCAAGTTGCTGTTTTGCTTTCTAAACAAGGTGCTTCATTGAAGGTTGAAAATCCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGTGATTCGGATCTTCTAAAGAGATTATTGTGCTATGGCATTGATCCCAACTCCAAAGATTATGATTTCCGAACTCCACTACATATAGCTGCCTCAGAAGGGCTAACTTTGATGGCAAAATTGCTCTTAGAATCTGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAGGCCGAATTTGTGGAAATAAGAATATGCTTAAGCTCTTGGAAGAGGCAAGAGCTTCTCAGTTGTCAGAATCTCCTTATTCCTCTCGAGAATTCCCAGACAAAAAACACTCAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCGTGAAGAAAACAAAAGACCTGGAATTATGCTATGGGTTCCACTCACTATTGAAGAGCTGATCAAGGAATCATCAGAGCAGCTACAAGTTTCAGGTGAATGTTGTATATTATCAGAAGATGGGGGTAAAATTCTTGATGTCCATATGATTGATGAAAGTCAAAAGCTGTATCTAGTTCCTGAAACTCATTAA 2490 41.33 MAISGGREEEEEERSRRRPDSSEEEEEYNVESVGEGIKSSRGSRFNLIQKQLRIERNRRRFSRENLINGIKCLVILPDSRWYRAWTKFILVWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFLAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCLPWDIIYKACGKREEVRYLLWIRLFRVRKVDAFFQTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQSLYLPYIQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLQGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLLEAIKNGNDQVAVLLSKQGASLKVENPGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHIAASEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLLEEARASQLSESPYSSREFPDKKHSKKCTVFPFHPWDREENKRPGIMLWVPLTIEELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPETH 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11191629 11201478 + ClCG03G008880.1 Cla03g00839 269339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00839 829 Gene3D Jelly Rolls 387 528 IPR014710 -
Cla03g00839 829 Pfam Ion transport protein 83 328 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla03g00839 829 ProSiteProfiles Ankyrin repeat profile. 677 709 IPR002110 GO:0005515
Cla03g00839 829 Gene3D - 537 645 IPR036770 -
Cla03g00839 829 ProSiteProfiles Ankyrin repeat profile. 580 612 IPR002110 GO:0005515
Cla03g00839 829 PANTHER POTASSIUM CHANNEL SKOR-LIKE 7 828 - -
Cla03g00839 829 SMART ANK_2a 613 642 IPR002110 GO:0005515
Cla03g00839 829 SMART ANK_2a 677 706 IPR002110 GO:0005515
Cla03g00839 829 SMART ANK_2a 580 609 IPR002110 GO:0005515
Cla03g00839 829 SMART ANK_2a 644 673 IPR002110 GO:0005515
Cla03g00839 829 SMART ANK_2a 710 739 IPR002110 GO:0005515
Cla03g00839 829 PRINTS EAG/ELK/ERG potassium channel family signature 118 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla03g00839 829 PRINTS EAG/ELK/ERG potassium channel family signature 227 237 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla03g00839 829 PRINTS EAG/ELK/ERG potassium channel family signature 275 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla03g00839 829 PRINTS EAG/ELK/ERG potassium channel family signature 319 328 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla03g00839 829 PRINTS Ankyrin repeat signature 581 596 IPR002110 GO:0005515
Cla03g00839 829 PRINTS Ankyrin repeat signature 693 707 IPR002110 GO:0005515
Cla03g00839 829 ProSiteProfiles Ankyrin repeat region circular profile. 580 612 - -
Cla03g00839 829 Pfam KHA, dimerisation domain of potassium ion channel 755 824 IPR021789 -
Cla03g00839 829 Gene3D - 646 741 IPR036770 -
Cla03g00839 829 SUPERFAMILY Ankyrin repeat 552 732 IPR036770 -
Cla03g00839 829 SUPERFAMILY Voltage-gated potassium channels 77 328 - -
Cla03g00839 829 SUPERFAMILY cAMP-binding domain-like 331 522 IPR018490 -
Cla03g00839 829 Gene3D Helix hairpin bin 330 386 - -
Cla03g00839 829 MobiDBLite consensus disorder prediction 1 35 - -
Cla03g00839 829 PANTHER POTASSIUM CHANNEL AKT1 7 828 IPR045319 GO:0005249|GO:0006813
Cla03g00839 829 CDD CAP_ED 403 517 IPR000595 -
Cla03g00839 829 ProSiteProfiles KHA domain profile. 756 829 IPR021789 -
Cla03g00839 829 ProSiteProfiles Ankyrin repeat region circular profile. 677 709 - -
Cla03g00839 829 ProSiteProfiles cAMP/cGMP binding motif profile. 403 523 IPR000595 -
Cla03g00839 829 SMART cnmp_10 403 521 IPR000595 -
Cla03g00839 829 MobiDBLite consensus disorder prediction 1 24 - -
Cla03g00839 829 ProSiteProfiles Ankyrin repeat profile. 613 645 IPR002110 GO:0005515
Cla03g00839 829 Pfam Cyclic nucleotide-binding domain 423 507 IPR000595 -
Cla03g00839 829 Gene3D - 85 329 - -
Cla03g00839 829 Pfam Ankyrin repeats (3 copies) 650 730 IPR002110 GO:0005515
Cla03g00839 829 Pfam Ankyrin repeats (3 copies) 555 642 IPR002110 GO:0005515
Cla03g00839 829 ProSiteProfiles Ankyrin repeat region circular profile. 613 644 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00839 Cla-Chr3:11191629 Cla06g01070 Cla-Chr6:23198647 8.16E-124 dispersed
Cla09g02157 Cla-Chr9:39215083 Cla03g00839 Cla-Chr3:11191629 3.59E-06 dispersed
Cla03g00839 Cla-Chr3:11191629 Cla01g02349 Cla-Chr1:37242729 1.60E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00839 K21867 - csv:101210912 1546.56