Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00848 ATGGACTCAAGAGGCCATTCCAATGGCAGAGAACTCGAAACAAAGGAGATGGACATTAGAAGTCTTTCATCTTCACGCAACAATACACAGTGCATTCATAAGGTGGGGGTTCCACCAAAGCAAAATCTCTTCAAAGAATTTAAAGCCAGAGTGAAAGAGACTTTCTTCGCAGATGATCCTCTGCGAACCTTCAAGGACCAATCGAAGTCTCGAAAGTTGGTCCTGGGAATTCAGGCTATCTTCCCGATATTTGAATGGGGGAGGAGTTACAATTTGACTAAATTTAGAGGAGATATAATTGCTGGACTCACTATTGCAAGTTTGTGTATTCCACAGGATATAGGGTATGCAAAACTTGCTAATTTGGCTCCCCAGTATGGATTATATTCCAGCTTTGTACCACCACTGGTTTATGCTTTAATGGGTAGCTCAAGAGACATAGCGATTGGACCCGTGGCTGTTGTTTCTCTCTTGCTGGGAACACTGCTTCAAAAGGAGATTGATTACCATACACATCCAGAAGAGTATCTGCGGCTTGCATTTACGGCTACTTTTTTTGCTGGGATCACCCAAGCCACTCTAGGGATACTAAGGTTGGGTTTTCTGATTGACTTTCTATCTCACGCTGCCATTGTGGGTTTTATGGGTGGAGCTGCCATCACTATAGCCCTTCAGCAACTTAAAGGCTTTCTTGGTATTCAAAAGTTTACAAAGAAAACAGACATTATTTCTGTAATGCGCTCAGTATTTGAGGCAGCGCATCATGGATGGAACTGGCAGACAATAGTCATTGGAGTAGCTTTTCTATGTTTTCTTCTATTAGCCAAGTATATTGTAAGAATCTCACTTGCCATTGTTACCTGGGGCAAATTTATATATAAGCTCTTTTTCCTGTTTCTTTCCTTGGCCTTAGAAGAGCTTTTATGTCTTCGATCTCAGGGAAAGAAAAATAAGAACCTTTTTTGGGTGCCTGCAATTGCTCCATTAATATCAGTTATTCTGTCCACCTTCTTTGTTTACATAACCCATGTAGACCAGAAAGGTGTCGCAATCGTGAAACACATAGAGAAAGGAATCAATCCCTCATCAGTGAAGCAAATTTACTTCACCGGTGACAACCTCCTTAAAGGATTCAGGATTGGTGCAGTGGCTGGTATGATAGCATTAACGGAAGCCATAGCAATTGGAAGAACATTTGCTACCATGAAGGATTACCAGCTTGATGGTAACAAAGAAATGGTAGCACTAGGAACAATGAATGTTATTGGTTCAATGACTTCCTGCTATGTGGCAACAGGCTCGTTCTCTCGCTCAGCTGTGAATTACATGTCTGGCTGTCAAACTGCAGTCTCAAACATTGTTATGTCCTGTGTTGTATTTCTAACTCTAGAATTCATCACGCCCCTTTTCAAGTACACTCCAAATGCTATTCTCGCTGTCATCATTATCTCTGCTGTGATCAACTTGATTGACATTCAGGCAGCAATTTTGCTTTGGAAGATTGATAAATTTGATTTTGTTGCTTGTTTGGGAGCCTTCTTCGGTGTGATATTTGCAAGTGTTGAGATAGGCCTCCTAATTGCTGTCTCTATATCATTTGCTAAGATACTCTTACAAGTAACCAGGCCACGGGTTGCTGTTCTCGGAAAGATCCCTAGGACTACAGTATACAGGAACACTCAACAGTATCCAGAAGCAACAAAGGTTCCTGGCATTCTCATTGTTCTGTTAGTTACAGGAGCTCTTGCCTTTTCCAATTCTGCTACCCTTGCCCTTATAATATTGGAAACTCCATGCAGGATATTGAGATGGTTGGCAGATGAGGAAGAACAAAAAAAGAAGGCTTATTCAACAAAACCTCAGTTTTTGATTGTTGAGATGTCTCCTGTTACCGACATTGACACTAGTGGAATTCATGCCTTGGAAGAGCTATACAGGAATCTCCAGAAACGAGACATTCAGCTTGTTTTGGCAAACCCTGGGCCGGTAGTGATTGACAAACTCCACGCATCCAATCTTGCTAATCTGATTGGGGAGGACCATATCTTTCTAACAGTTGCTGAAGCTGTCTCATCTTGCTCCCCAAAATTGGTGGAAGAAGCCTAG 2106 41.79 MDSRGHSNGRELETKEMDIRSLSSSRNNTQCIHKVGVPPKQNLFKEFKARVKETFFADDPLRTFKDQSKSRKLVLGIQAIFPIFEWGRSYNLTKFRGDIIAGLTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLVYALMGSSRDIAIGPVAVVSLLLGTLLQKEIDYHTHPEEYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQKFTKKTDIISVMRSVFEAAHHGWNWQTIVIGVAFLCFLLLAKYIVRISLAIVTWGKFIYKLFFLFLSLALEELLCLRSQGKKNKNLFWVPAIAPLISVILSTFFVYITHVDQKGVAIVKHIEKGINPSSVKQIYFTGDNLLKGFRIGAVAGMIALTEAIAIGRTFATMKDYQLDGNKEMVALGTMNVIGSMTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSCVVFLTLEFITPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACLGAFFGVIFASVEIGLLIAVSISFAKILLQVTRPRVAVLGKIPRTTVYRNTQQYPEATKVPGILIVLLVTGALAFSNSATLALIILETPCRILRWLADEEEQKKKAYSTKPQFLIVEMSPVTDIDTSGIHALEELYRNLQKRDIQLVLANPGPVVIDKLHASNLANLIGEDHIFLTVAEAVSSCSPKLVEEA 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11354297 11358838 + ClCG03G008970.2 Cla03g00848 269348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00848 701 ProSiteProfiles STAS domain profile. 573 693 IPR002645 -
Cla03g00848 701 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Cla03g00848 701 PANTHER SULFATE TRANSPORTER 304 700 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla03g00848 701 PANTHER SULFATE TRANSPORTER 15 282 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla03g00848 701 SUPERFAMILY SpoIIaa-like 575 694 IPR036513 -
Cla03g00848 701 Gene3D STAS domain 542 696 IPR036513 -
Cla03g00848 701 PANTHER SULFATE TRANSPORTER 1.3 304 700 - -
Cla03g00848 701 CDD STAS_SulP_like_sulfate_transporter 563 686 - -
Cla03g00848 701 Pfam STAS domain 563 689 IPR002645 -
Cla03g00848 701 Pfam Sulfate permease family 95 510 IPR011547 GO:0016021
Cla03g00848 701 TIGRFAM sulP: sulfate permease 301 689 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla03g00848 701 PANTHER SULFATE TRANSPORTER 1.3 15 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00848 Cla-Chr3:11354297 Cla11g01499 Cla-Chr11:28656522 0 dispersed
Cla09g01967 Cla-Chr9:37269096 Cla03g00848 Cla-Chr3:11354297 1.41E-99 dispersed
Cla03g00847 Cla-Chr3:11307918 Cla03g00848 Cla-Chr3:11354297 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00848 K17470 - csv:101212138 1166.37