Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00859 ATGGGCTCCATAGACGTCCAATCAACCAACGTTGAAAATGGATCCGCCGCCGCCTCTGCTGATGGTCGTCAAAAGCCAGTTCCCGCCGACGGTTTGAACCAGACATCTAACGAGCCAGACGGAACGGCGCCTGAGAAGCCTAAGGAATTGGGGCCGACGAAGAAGCGTATGTCCTCCATGCTTCCTCTAGATGTCGGCACCCGCGTCATGTGCCGCTGGAGGGACGGGAAGTACCATCCCGTTAAGGTCATCGAGCGTCGGAAGTTGCAGGCAACTGGTTTTAGTGACTACGAATACTATGTCCATTACACCGAGTTCAATAGGAGACTTGATGAGTGGGTGAAGCTTGACCAACTTGATCTTGATTCAGTGGAGACGGTTGTTGATGAGAAAGTGGAAGACAAGGTAACAGGGTTGAAGATGACCCGACACCAGAAGCGGAAGATTGATGAAACCCATGTTGAGGGTCATGAGGAACTTGATGCGGCCAGCTTAAGGGAGCATGAAGAATTTACGAAAGTGAAAAATATTGCAACAATTGAACTTGGAAGATACGAGATTGAGACATGGTATTTCTCCCCCTTTCCACCCGAGTACAATGACACTACAAAGCTCTATTTTTGTGAGTTTTGTCTCAATTTCATGAAGCGCAAAGAACAGCTCCAGAGACATATGAGGAAGTGTGATCTGAAGCATCCTCCTGGTGATGAAATTTATCGATGTGGTACTTTATCAATGTTTGAGGTTGATGGAAAAAAGAACAAGGTTTATGGGCAGAATCTCTGTTACTTAGCAAAGTTATTTCTGGACCACAAGACTCTCTACTATGATGTCGACCTTTTTCTGTTTTATGTCCTGTGCGAGTGTGATGATCGAGGGTGTCACATGGTTGGATATTTTTCAAAGGAAAAGCATTCAGAGGAATCCTATAATTTGGCATGCATTCTCACCCTTCCTCCTTATCAAAGGAAGGGCTATGGCAAGTTCTTAATAGCTTTTTTTGTGATCTTTTATGAAACCGAGAGATCAGCTTATGAACTCTCCAAGAAGGAAGGTAAAGTTGGCACTCCTGAAAGACCTCTTTCAGACCTTGGGTTGGTGAGCTACAGAGGATACTGGACCAGAGTTCTTTTAGACATCTTGAAAAAGCACAAGGCCAATATCTCTATCAAGGATGTACTATTAGTCATTGGTCTGATATGGATTCTATTGCTTGGCGCATTGGTCATCCCTTTATGTCAGGAGCTAAGTGACATGACAGCTATCAAAGCCGAAGATATTTTGAACACACTTCAGAGCCTGGAGTTGATTCAATACAGGAAAGGGCAGCATGTTATATGTGCTGACCCGAAGGTGCTGGATCGTCATCTCAAAGCTGCTGGTCGTGGGGGCCTAGAGGTCGATGTTAGCAAATTGATCTGGACTCCATACAGAGAACAGGGTTGA 1446 45.23 MGSIDVQSTNVENGSAAASADGRQKPVPADGLNQTSNEPDGTAPEKPKELGPTKKRMSSMLPLDVGTRVMCRWRDGKYHPVKVIERRKLQATGFSDYEYYVHYTEFNRRLDEWVKLDQLDLDSVETVVDEKVEDKVTGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDTTKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRCGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFFVIFYETERSAYELSKKEGKVGTPERPLSDLGLVSYRGYWTRVLLDILKKHKANISIKDVLLVIGLIWILLLGALVIPLCQELSDMTAIKAEDILNTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYREQG 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11775623 11785255 - ClCG03G009080.1 Cla03g00859 269359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00859 481 CDD CBD_MOF_like 66 135 - -
Cla03g00859 481 Pfam RNA binding activity-knot of a chromodomain 63 121 IPR025995 -
Cla03g00859 481 SMART chromo_7 77 136 IPR000953 -
Cla03g00859 481 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 172 476 IPR002717 GO:0004402|GO:0006355|GO:0016573
Cla03g00859 481 PANTHER HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2 13 393 - -
Cla03g00859 481 Gene3D - 52 172 - -
Cla03g00859 481 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 173 477 IPR016181 -
Cla03g00859 481 Pfam MOZ/SAS family 233 443 IPR002717 GO:0004402|GO:0006355|GO:0016573
Cla03g00859 481 Gene3D - 173 229 - -
Cla03g00859 481 Gene3D - 231 476 - -
Cla03g00859 481 PANTHER HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2 414 480 - -
Cla03g00859 481 Pfam MYST family zinc finger domain 174 228 IPR040706 -
Cla03g00859 481 MobiDBLite consensus disorder prediction 1 59 - -
Cla03g00859 481 Gene3D - 361 455 IPR036388 -
Cla03g00859 481 PANTHER HISTONE ACETYLTRANSFERASE 13 393 - -
Cla03g00859 481 MobiDBLite consensus disorder prediction 1 17 - -
Cla03g00859 481 SUPERFAMILY Chromo domain-like 54 173 IPR016197 -
Cla03g00859 481 PANTHER HISTONE ACETYLTRANSFERASE 414 480 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00859 K11308 - csv:101217824 874.774