Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00889 ATGGCATCTGCCATGGCCAAACCCAAAATACAGAGAAAGCTCAGCAGACAGAGCCATGAAAACCAGAAACCGAAGCCGCCGTCTTGGGCTGTTGTTAAAGGCATATTCAGTTGCAAGTACCTGCAGCCTCAGCAGCAGCAGCAACAACAACATCATCAATTACCACGCAAAGAGAAACAACAGGAGCAAGCAACAGAAGAGATTAGCAAGAACTGTAAGAAAATGAGATGTTCAGGTTCACTCTGTAGCAACACCAAGATAACACACAGGCTTGAAGCAGCTGCATCCCCAGAAGTTCACAAGAAAAGGGTTTTGACTTCCAGAAACAATGAATCTTCAAGTTCAAGTAGATCCAGCAAAGCTCCTCCTTTGAATGAACAAACTGTATCAGCTACATGTTCATCATTATCTGCATCATCATCTTCTTCTAATTCCTCCAATGGAGCCTCCTCTTTCAGGGGAATGCCTTTCAGAAGATTTTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTATTGGGATGACTAGAGATCCTTCTCTTAGAGCAACCATTTGCCCTTGTCCTGAATGTGGTGAGATCTTCATGAAACCTGAAACTTTGGAGCTTCACCAGAGTGTTAGACATGCAGTATCTGAACTTGGTCCTGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCGAGCTGGCTAAAAAAGCAAACCCCAATTTGCAAAATTGAAAGGATTCTTAAAGTCCAGAACACTCCAAAAACCATCTCGAAATTCGAGGAATACAGGGATTCCATCAAAGCCAAAGCCACCAAGCTTCCAAAGAAATACCCACGTTGCATAGCAGACGGTAACGAACTCCTAAGGTTCCATTGCACAACCCTGGGTTGTTCATTGGGCCTAAATGGCTCTTCAAACCTCTGTAGTTCAATCCCACAATGCAATGTGTGTAGCATAATCAAGAATGGGTTCAAGATGGCTGCAGAGGCTACCGGAGGGGAAGCTGGAAAGGGGATTCTAACAACCGCTACCAGTGGAAAGGCTCATGATAGTGCGGGAGTATCATCGGAGTCCGGCAACGGCAACGATAAACGAGCAATGCTTGTTTGCCGAGTAATAGCTGGGAGGGTGAAGAAGAGTTCAGAAGGAAGCATGGAAGATTACGACTCATTGGCGGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTGTATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGAGGTTTTTAA 1272 44.18 MASAMAKPKIQRKLSRQSHENQKPKPPSWAVVKGIFSCKYLQPQQQQQQQHHQLPRKEKQQEQATEEISKNCKKMRCSGSLCSNTKITHRLEAAASPEVHKKRVLTSRNNESSSSSRSSKAPPLNEQTVSATCSSLSASSSSSNSSNGASSFRGMPFRRFYGCYECKMVIDPVIGMTRDPSLRATICPCPECGEIFMKPETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLGCSLGLNGSSNLCSSIPQCNVCSIIKNGFKMAAEATGGEAGKGILTTATSGKAHDSAGVSSESGNGNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12495477 12497086 + ClCG03G009380.1 Cla03g00889 269389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00889 423 ProSitePatterns Zinc finger C2H2 type domain signature. 187 210 IPR013087 -
Cla03g00889 423 MobiDBLite consensus disorder prediction 93 107 - -
Cla03g00889 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 215 IPR013087 -
Cla03g00889 423 Gene3D - 211 421 - -
Cla03g00889 423 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 420 - -
Cla03g00889 423 MobiDBLite consensus disorder prediction 93 127 - -
Cla03g00889 423 MobiDBLite consensus disorder prediction 42 70 - -
Cla03g00889 423 MobiDBLite consensus disorder prediction 108 127 - -
Cla03g00889 423 SUPERFAMILY ADP-ribosylation 212 421 - -
Cla03g00889 423 MobiDBLite consensus disorder prediction 52 70 - -
Cla03g00889 423 MobiDBLite consensus disorder prediction 1 28 - -
Cla03g00889 423 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01920 Cla-Chr2:34350878 Cla03g00889 Cla-Chr3:12495477 5.67E-65 dispersed
Cla03g00889 Cla-Chr3:12495477 Cla05g01874 Cla-Chr5:30593687 1.56E-106 dispersed
Cla03g00889 Cla-Chr3:12495477 Cla03g00895 Cla-Chr3:12603597 4.45E-40 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60824 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00889 - - bhj:120067077 712.99