Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g00889 | ATGGCATCTGCCATGGCCAAACCCAAAATACAGAGAAAGCTCAGCAGACAGAGCCATGAAAACCAGAAACCGAAGCCGCCGTCTTGGGCTGTTGTTAAAGGCATATTCAGTTGCAAGTACCTGCAGCCTCAGCAGCAGCAGCAACAACAACATCATCAATTACCACGCAAAGAGAAACAACAGGAGCAAGCAACAGAAGAGATTAGCAAGAACTGTAAGAAAATGAGATGTTCAGGTTCACTCTGTAGCAACACCAAGATAACACACAGGCTTGAAGCAGCTGCATCCCCAGAAGTTCACAAGAAAAGGGTTTTGACTTCCAGAAACAATGAATCTTCAAGTTCAAGTAGATCCAGCAAAGCTCCTCCTTTGAATGAACAAACTGTATCAGCTACATGTTCATCATTATCTGCATCATCATCTTCTTCTAATTCCTCCAATGGAGCCTCCTCTTTCAGGGGAATGCCTTTCAGAAGATTTTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTATTGGGATGACTAGAGATCCTTCTCTTAGAGCAACCATTTGCCCTTGTCCTGAATGTGGTGAGATCTTCATGAAACCTGAAACTTTGGAGCTTCACCAGAGTGTTAGACATGCAGTATCTGAACTTGGTCCTGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCGAGCTGGCTAAAAAAGCAAACCCCAATTTGCAAAATTGAAAGGATTCTTAAAGTCCAGAACACTCCAAAAACCATCTCGAAATTCGAGGAATACAGGGATTCCATCAAAGCCAAAGCCACCAAGCTTCCAAAGAAATACCCACGTTGCATAGCAGACGGTAACGAACTCCTAAGGTTCCATTGCACAACCCTGGGTTGTTCATTGGGCCTAAATGGCTCTTCAAACCTCTGTAGTTCAATCCCACAATGCAATGTGTGTAGCATAATCAAGAATGGGTTCAAGATGGCTGCAGAGGCTACCGGAGGGGAAGCTGGAAAGGGGATTCTAACAACCGCTACCAGTGGAAAGGCTCATGATAGTGCGGGAGTATCATCGGAGTCCGGCAACGGCAACGATAAACGAGCAATGCTTGTTTGCCGAGTAATAGCTGGGAGGGTGAAGAAGAGTTCAGAAGGAAGCATGGAAGATTACGACTCATTGGCGGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTGTATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGAGGTTTTTAA | 1272 | 44.18 | MASAMAKPKIQRKLSRQSHENQKPKPPSWAVVKGIFSCKYLQPQQQQQQQHHQLPRKEKQQEQATEEISKNCKKMRCSGSLCSNTKITHRLEAAASPEVHKKRVLTSRNNESSSSSRSSKAPPLNEQTVSATCSSLSASSSSSNSSNGASSFRGMPFRRFYGCYECKMVIDPVIGMTRDPSLRATICPCPECGEIFMKPETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLGCSLGLNGSSNLCSSIPQCNVCSIIKNGFKMAAEATGGEAGKGILTTATSGKAHDSAGVSSESGNGNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 12495477 | 12497086 | + | ClCG03G009380.1 | Cla03g00889 | 269389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g00889 | 423 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 187 | 210 | IPR013087 | - | |
Cla03g00889 | 423 | MobiDBLite | consensus disorder prediction | 93 | 107 | - | - | |
Cla03g00889 | 423 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 187 | 215 | IPR013087 | - | |
Cla03g00889 | 423 | Gene3D | - | 211 | 421 | - | - | |
Cla03g00889 | 423 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 28 | 420 | - | - | |
Cla03g00889 | 423 | MobiDBLite | consensus disorder prediction | 93 | 127 | - | - | |
Cla03g00889 | 423 | MobiDBLite | consensus disorder prediction | 42 | 70 | - | - | |
Cla03g00889 | 423 | MobiDBLite | consensus disorder prediction | 108 | 127 | - | - | |
Cla03g00889 | 423 | SUPERFAMILY | ADP-ribosylation | 212 | 421 | - | - | |
Cla03g00889 | 423 | MobiDBLite | consensus disorder prediction | 52 | 70 | - | - | |
Cla03g00889 | 423 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cla03g00889 | 423 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 28 | 420 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01920 | Cla-Chr2:34350878 | Cla03g00889 | Cla-Chr3:12495477 | 5.67E-65 | dispersed | |
Cla03g00889 | Cla-Chr3:12495477 | Cla05g01874 | Cla-Chr5:30593687 | 1.56E-106 | dispersed | |
Cla03g00889 | Cla-Chr3:12495477 | Cla03g00895 | Cla-Chr3:12603597 | 4.45E-40 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60824 | None | None | None | None | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g00889 | - | - | bhj:120067077 | 712.99 |