Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00935 ATGCTTCTCGCCGTCTTTATTGGAACTGGAAAGGCATTCTTGCTGAAATCTTTTATGAATATGATTGAAAAGGAATTTTTTACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTTATAGGTAGAGGGAGCTATGGAGTTGTTGCGTCTGCCATAGACACTCATTCTGGTGAAAAAGTTGCCATCAAGAAGATAAATAATGTCTTTGAGCATGTTTCTGATGCCACACGGATTCTAAGAGAAATTAAGCTCCTTCGGTTTCTTCGGCATCCTGATATTGTTGACATAAAACATATAATGCTCCCTCCATCCAGGAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAATGACGATCTCACTCCTCAGCATCATCAGTTTTTCTTGTATCAGCTTCTTAGAGCCTTGAAGTATATACATTCAGCTCATGTGTTCCATAGGGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCGCGTGCATCTTTCAGTGATGCCCCATCTGCTATTTTTTGGACTGATTATGTTGCTACTCGGTGGTACCGTGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTTGCGGAAATGCTGTCAAGCAAGCCTTTGTTTCCTGGGAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTCGGTACTCCTTCAGCTGAATGTATTGCTAAGATTCGTAATGAGAAGGCCAAAAGGTATTTGAGTGGTATGAGAAAAAAGAATCCTATACCTCTTTCAAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCGTTTACTTGAACGTCTTCTTGCATTTGATCCTGAGGACCGTCCTTCTGCGGAGGAGGCATTAGCTGATCCTTATTTCCATGGACTGGCAAATCTGAAGGATGAACCATCCAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCACCCTCAAATGCTACAAGAGTACCTTCAAGGTTCTGGGAGTCACTTTCTGTATCCTAGTGGAATTGATCGATTCAAGCGACAATTTGATCATCTTGAGGAACGTTCTGGTAAAGGTGAGAGAGGCAGTCCACTTTTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATTCACCAAGAGATGAAGATGATGATGAAAAACGTAAAATAGAACAGCGAAATGCAGCTTCGGCTGAACGTGCAGCGTTTCAAAGCCCTCCTGGACCTGCTTATCCATTAACTGCTGGAAACGGTTCTGTTCAAGTAGATTGCAATAGTTATAACCTGTTGAGGAGTGCTAGTATAAATTGTTCTAAATGGGTGGATTAA 1482 40.69 MLLAVFIGTGKAFLLKSFMNMIEKEFFTEYGEATQYEIEEVIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHIMLPPSRREFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLSSKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLSGMRKKNPIPLSRKFPNADPLALRLLERLLAFDPEDRPSAEEALADPYFHGLANLKDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSGSHFLYPSGIDRFKRQFDHLEERSGKGERGSPLLRKHASLPRERIYSPRDEDDDEKRKIEQRNAASAERAAFQSPPGPAYPLTAGNGSVQVDCNSYNLLRSASINCSKWVD 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15460447 15465435 + ClCG03G009780.2 Cla03g00935 269435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00935 493 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 452 - -
Cla03g00935 493 SUPERFAMILY Protein kinase-like (PK-like) 33 332 IPR011009 -
Cla03g00935 493 MobiDBLite consensus disorder prediction 404 465 - -
Cla03g00935 493 ProSitePatterns MAP kinase signature. 71 174 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cla03g00935 493 MobiDBLite consensus disorder prediction 404 446 - -
Cla03g00935 493 ProSiteProfiles Protein kinase domain profile. 36 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00935 493 Gene3D Phosphorylase Kinase; domain 1 52 373 - -
Cla03g00935 493 Pfam Protein kinase domain 36 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00935 493 SMART serkin_6 36 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g00935 493 CDD STKc_TDY_MAPK 35 372 - -
Cla03g00935 493 ProSitePatterns Protein kinases ATP-binding region signature. 42 66 IPR017441 GO:0005524
Cla03g00935 493 Gene3D Transferase(Phosphotransferase) domain 1 122 350 - -
Cla03g00935 493 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00935 Cla-Chr3:15460447 Cla06g01427 Cla-Chr6:27853411 0 dispersed
Cla03g00935 Cla-Chr3:15460447 Cla07g00638 Cla-Chr7:12421762 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80442 PF00069 Pkinase 1.90E-67 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00935 - - csv:101204645 876.7