Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00943 ATGGACGCAAGCTCTATAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACTCCATTACTCTTCCACTCATCGCCCTCCGCTACGGCGGAGGCCGAGTCCCGTAAACTTCCTTCTTCCCGTTTCAAAGGTGTCGTCCCTCAGCCCAACGGCCGATGGGGCGCTCAGATTTACGAGAAACACCAAAGAGTATGGCTAGGCACTTTCAACGAAGAACACGACGCCGCCAAGGCTTACGACATCGCCGCCCTCCGCTTCCGTGGCCGCGACGCCGTCACCAACTTCAAACCCCTCCACCACGACGACCACGCCGCCGTCGAGGCCGACTTTCTCAACTCCCACTCTAAGCTCGAGATCGTGGACATGCTCCGCAAACACACCTACAATGACGAACTCCAGCAGAGCAAACGCCAGAGGGGGCCCACGACGGCGGATTCAGCCTCCGGAACGTCCCCTAATTACTCTGGGTGGGATTCGAAGAGGGAAGTGCTGTTCGAGAAAACCGTGACGCCGAGTGACGTGGGGAAGCTGAACAGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCGATGGGGGAGGGGGTGGTTCTAGGGAAAGGAATGCTTTTAAACTTCGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGGTACTCGTATTGGAATAGCAGCCAGAGCTATGTGTTGACTAAAGGCTGGAGCCGCTTCGTTAAAGACAACACTCTCCGAGCCGGAGATGTGGTTCGGTTCCTCCGCTCCACCGGCCCAGATAAGCAGCTTTACATCCATGCTAACCCCACCCCTGGACCCGCAATTAACCCGGTTCATGTTGTCAAGCTTTTTGGAGTCAATATTTTGCAATTGCCAGTGGGGAAGACAGAAGGGGTATTCTTGGAATTACAACCTACCAAGAAGCAAAGAATAATCAAACCTTTGTAA 951 54.68 MDASSIDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPLHHDDHAAVEADFLNSHSKLEIVDMLRKHTYNDELQQSKRQRGPTTADSASGTSPNYSGWDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGEGVVLGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPTPGPAINPVHVVKLFGVNILQLPVGKTEGVFLELQPTKKQRIIKPL 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15722651 15723601 - ClCG03G009860.1 Cla03g00943 269443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00943 316 Gene3D AP2/ERF domain 43 100 IPR036955 GO:0003700|GO:0006355
Cla03g00943 316 CDD B3_DNA 167 267 IPR003340 GO:0003677
Cla03g00943 316 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 28 295 - -
Cla03g00943 316 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 295 IPR044800 GO:0003700
Cla03g00943 316 SUPERFAMILY DNA-binding domain 43 99 IPR016177 GO:0003677
Cla03g00943 316 MobiDBLite consensus disorder prediction 1 23 - -
Cla03g00943 316 SMART rav1_2 44 105 IPR001471 GO:0003700|GO:0006355
Cla03g00943 316 CDD AP2 43 98 IPR001471 GO:0003700|GO:0006355
Cla03g00943 316 MobiDBLite consensus disorder prediction 133 158 - -
Cla03g00943 316 Pfam B3 DNA binding domain 168 266 IPR003340 GO:0003677
Cla03g00943 316 SMART B3_2 168 270 IPR003340 GO:0003677
Cla03g00943 316 ProSiteProfiles B3 DNA-binding domain profile. 168 272 IPR003340 GO:0003677
Cla03g00943 316 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Cla03g00943 316 MobiDBLite consensus disorder prediction 137 158 - -
Cla03g00943 316 Gene3D - 158 274 IPR015300 -
Cla03g00943 316 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Cla03g00943 316 ProSiteProfiles AP2/ERF domain profile. 44 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00943 Cla-Chr3:15722651 Cla05g02328 Cla-Chr5:34860451 3.18E-135 dispersed
Cla03g00943 Cla-Chr3:15722651 Cla01g00124 Cla-Chr1:1170541 3.48E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60827 PF02362 B3 1.60E-27 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00943 K09287 - csv:101206328 566.614