Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00953 ATGCAGCAAAGTTGGAAGTTGAGTTGCATATCATCAAGTGAGAGTGGATGTTTGGAGGGTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCCCTTTCCCCTCCTGGCCAACGCCATTCATTCTCTTCCAAACAACAACAACAACAATCTTCTCTTCAAAACCCTAATCATCATCAAAATGCTGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCTCCTCTCTCCTCCTCCTCCGCCCCTGCGGTCCGCCCCCTCGACGCCGCACACTACTGGATCCCTACACCTGCCCAAATCCTCGTTGGTCCCACCCAATTCTCCTGCTCTGTCTGTACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGTCATGGCTCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAAGCTTCCATGCTATTGCTGTGCAGAAGGGTGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAAACTCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCATTTGCTGTAAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGTATTTGTGGCTCTGATTTTAAACACAAAAGATCCCTTAAAGACCATGTTAGAGCCTTTGGAGATGGCCATGCACCTCATACTGTCCAACTTTGTGAGGTTGAAGATGATGATGATTGGGATGATCATGATGATGATGATCATATAAATGGACCTCAACCCTGGTCCATTTATCATTAA 834 46.04 MQQSWKLSCISSSESGCLEGDEEGEESIFLSLSPPGQRHSFSSKQQQQQSSLQNPNHHQNAAAVTVAMHIGPPPLSSSSAPAVRPLDAAHYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKPASSMLKLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDDWDDHDDDDHINGPQPWSIYH 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16231739 16233057 - ClCG03G009940.1 Cla03g00953 269453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00953 277 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Cla03g00953 277 SUPERFAMILY beta-beta-alpha zinc fingers 174 211 IPR036236 -
Cla03g00953 277 Gene3D Classic Zinc Finger 187 246 - -
Cla03g00953 277 Gene3D Classic Zinc Finger 105 128 - -
Cla03g00953 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Cla03g00953 277 PANTHER ZINC FINGER PROTEIN WIP6 1 265 - -
Cla03g00953 277 PANTHER ZINC FINGER PROTEIN WIP2 1 265 IPR043584 GO:0003700|GO:0010468
Cla03g00953 277 MobiDBLite consensus disorder prediction 33 59 - -
Cla03g00953 277 SMART c2h2final6 154 186 IPR013087 -
Cla03g00953 277 SMART c2h2final6 191 211 IPR013087 -
Cla03g00953 277 SMART c2h2final6 106 128 IPR013087 -
Cla03g00953 277 SUPERFAMILY beta-beta-alpha zinc fingers 101 129 IPR036236 -
Cla03g00953 277 Pfam Zinc finger, C2H2 type 106 125 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00953 Cla-Chr3:16231739 Cla04g00085 Cla-Chr4:2589146 2.12E-100 dispersed
Cla03g00953 Cla-Chr3:16231739 Cla02g02261 Cla-Chr2:37716394 3.98E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60828 PF00096 zf-C2H2 0.0089 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00953 - - csv:101216722 486.878