Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g00982 ATGGAATTCCGCTGTGGCTTCATCTTCTTCCTCTTGATTTGTTCATCTGTGGCTTTTCAATCCGACGAGCTTCTCGTTGATGATGACGAGTTTGAAGGGACACAGCAGACTCAGTATATCGACGCCGCTCATACCCGATCCACACCTCCTCCAAGCCGTCCGACATCGACTAGGAGGCGATTTTCTGATCCTGATTCGGATTCTAAGGTCCAATTTCAGCTAGAGCAATCATTTGGGGACTCTGATTTCGCTCCTGCTGGCTTATTTACTGCACGTCTGAAGACTTCGAGCCATGGTGGTCAGTCACTTACAAAGCTGCGGTTTTCAAGAAATGCTTTTACTGAAGAGGATAGGAAGAAGTTCACGACCTTGTTGCAAGAAGATGGTTTCTACAGTGTAAGATTGGCAACAAATGTTTTGAAGTCACCGGGAGAGAGCTATGTTTACTCATCAGTGAAAGCAAGATGTCTTCCGCGAGTAGAGTTGGATGAACATTTTGTCATTCACATGGATGGTGTTAATATTTTGGCTGTTAATTACGGCACTCCTGGTGCATGCCCTTTTCCCAGACAACTGAAACTTCCTTCAAAATGGTCTTTTAACTCTCTCACATTTTTGAAGAGTGGCGAGCAGGCTCCAAGAACTCCTGTATTGGCTGATGACATTCTTGTTGGTGAGACTGGAGAAGGGGAAGGTGTAAAGCCACCTGAAAAGTCATTTTGGGCTAAATATTGGATGTACCTGATACCACTTGGATTGATTGTTATGAATGCCATAACACAAGCAATGAACATGGCTGAAGAACAGGTTAGTGGCCAAGCAGCACAGCCACAGCAGTCAGCCGCTGCAATTCAGCGCGGACCAGGTTCTTCTGCAGTAAGACGACGATAG 891 45.68 MEFRCGFIFFLLICSSVAFQSDELLVDDDEFEGTQQTQYIDAAHTRSTPPPSRPTSTRRRFSDPDSDSKVQFQLEQSFGDSDFAPAGLFTARLKTSSHGGQSLTKLRFSRNAFTEEDRKKFTTLLQEDGFYSVRLATNVLKSPGESYVYSSVKARCLPRVELDEHFVIHMDGVNILAVNYGTPGACPFPRQLKLPSKWSFNSLTFLKSGEQAPRTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQAAQPQQSAAAIQRGPGSSAVRRR 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18494080 18520031 - ClCG03G010290.2 Cla03g00982 269482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g00982 296 MobiDBLite consensus disorder prediction 37 66 - -
Cla03g00982 296 MobiDBLite consensus disorder prediction 273 296 - -
Cla03g00982 296 PANTHER BNAC04G29940D PROTEIN 7 296 - -
Cla03g00982 296 PANTHER CHROMATIN COMPLEXES SUBUNIT BAP18-RELATED 7 296 - -
Cla03g00982 296 MobiDBLite consensus disorder prediction 37 57 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g00982 K23570 EMC10; ER membrane protein complex subunit 10 - csv:101203960 524.242
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g883 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0588 Cone3ag0615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g00982 Cam03g1036 Cec03g1033 Cco03g1032 Clacu03g1014 Cmu03g1600 Cre03g1303 Lsi06g00675 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010535 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g00982 Cla_Chr03 FPKM 24.426186 27.590607 30.379862 32.141277 20.967312 19.834469 20.822882 29.355268 24.709579 26.479649