Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01012 ATGGGATCCTGCTTGTCTGCAGGAAGTAAGGAGGCCATTACTGGTTCCTCTGTATCTCCTGTGTTGGGAGCAATTAAGCAGAAAGACTCAGACAATGTGTTTGAGCAGCAGAATCAGGGTGAAGCGACAGTACACAGAATTCCTGGTAGGATGTTCTTGAATGGGTCCAGTGAAGTTGCTTCACTTCATACTCAACAGGGCAAGAAAGGGATGAACCAAGATGCCATGATTGTATGGGAGAATTTTGGCTCCAGAACAGATACATTCTTTTGTGGAGTTTTTGATGGCCATGGTCCTTATGGTCATCTGGTCGCAAAAAGAGTGAGGGATTCTCTTCCCCTGAAACTGACTGCACATTGGGAAGCTAATGAAGACATTTCAGAAGAGTTAGGTTGTAAAACAGAAGCTGTTAACAATGAAGATTCTACCTTAGAAATTAGTTGGAAGGAAGATAGTTCTCCCCTTACGCAGCCAGAAATTTCTGAAAAACTGAAGGAATCATTTCTGAAGGCTTTTCAGATAATGGATGGAGAACTCAAAATTCAACCAAGTATTGATTGCTTCTGTAGTGGGACAACAGCAGTAGCTCTTGTTAAGCAGGGTCGAGATCTTGTTATTGGAAACGTTGGGGACTCTCGGGCTGTGCTGGGTACCAGAGATGAGGATAATTCTCTCCAAGCGGTTCAATTGACCATAGATCTCAAGCCAGATATTCCAGGTTTCCTTCTCTGTCTCTCTCTTTTAATTGAAATATTTCTGAAGAAATCAAGACAATTGCCCCTTGGATATAGAACCAATGATGAACCAGAAGTTGCTAGAGTATGGCTTCCAAACAATGATTCCCCCGGGCTGGCGATGGCTCGATCTTTTGGAGACTTTTGCCTCAAGGATTTCGGTCTAATTTCTGTTCCTGAAATATCATATCGTTTTCTGTCTGACAAGGACGAGTTTATAGTTTTAGCTACAGACGGAATTTGGGATGTTCTTTCAAACAAAGAGGTAGTTGACATTGTAGCATCAGCCCCAGCTCGTTGTGCAGCCCGGTCATTGGTTGAGTCTGCAACTGAAGCATGGAGATGCAAGCTTCCTTCTTCCAACATTGACGACTGTGCCGTTGTCTGTCTCTTCCTTGACTCGAACTTGAACGTTATGGCATCAGAGACAAATATTAAATACAAGGAGGTTAAATCAGCAATCCAAGCTGAGACGGCCACGGTAGATGATGTCTCTGGAGAGGACTTAGAGTGGTAG 1251 43.49 MGSCLSAGSKEAITGSSVSPVLGAIKQKDSDNVFEQQNQGEATVHRIPGRMFLNGSSEVASLHTQQGKKGMNQDAMIVWENFGSRTDTFFCGVFDGHGPYGHLVAKRVRDSLPLKLTAHWEANEDISEELGCKTEAVNNEDSTLEISWKEDSSPLTQPEISEKLKESFLKAFQIMDGELKIQPSIDCFCSGTTAVALVKQGRDLVIGNVGDSRAVLGTRDEDNSLQAVQLTIDLKPDIPGFLLCLSLLIEIFLKKSRQLPLGYRTNDEPEVARVWLPNNDSPGLAMARSFGDFCLKDFGLISVPEISYRFLSDKDEFIVLATDGIWDVLSNKEVVDIVASAPARCAARSLVESATEAWRCKLPSSNIDDCAVVCLFLDSNLNVMASETNIKYKEVKSAIQAETATVDDVSGEDLEW 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19168090 19173576 + ClCG03G010590.1 Cla03g01012 269512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01012 416 SMART PP2C_4 48 375 IPR001932 -
Cla03g01012 416 ProSiteProfiles PPM-type phosphatase domain profile. 59 377 IPR001932 -
Cla03g01012 416 PANTHER ALPHABET, ISOFORM E-RELATED 1 392 - -
Cla03g01012 416 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 392 - -
Cla03g01012 416 SUPERFAMILY PP2C-like 57 378 IPR036457 -
Cla03g01012 416 Gene3D - 55 383 IPR036457 -
Cla03g01012 416 CDD PP2Cc 59 377 IPR001932 -
Cla03g01012 416 Pfam Protein phosphatase 2C 284 340 IPR001932 -
Cla03g01012 416 Pfam Protein phosphatase 2C 140 236 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01012 Cla-Chr3:19168090 Cla11g00927 Cla-Chr11:16035128 2.30E-171 dispersed
Cla03g01012 Cla-Chr3:19168090 Cla02g00118 Cla-Chr2:1360519 9.06E-120 transposed
Cla03g01012 Cla-Chr3:19168090 Cla02g01709 Cla-Chr2:31950483 7.02E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01012 - - cmax:111498595 599.356