Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01013 ATGATAATTGCATATTGGTTAAGGAATGAAGCCTACCTATTTTTTAGTATTTTTTTTAAGAAAAAGAAAAAGAAAAAGAAAATTGTTGGGGGGTATAATTTAACAAATCTTAAGAAGCCTGAAGAATTTGGATTCACCATCACCAAAAAGCTCTCTAAATCTCCGATTCCCATGGTTTTCACATTGGGAGCTTCTTTCCCTATTATCCACGCCAACAGGCTCCCCACCGCCGTCGTCTCCGCCGCCGCCACCACCGCCAATCCAAGCAGCAACAGCTCTACTTCCCATTTGTTCGAAGCCACCTTCATCCGTCGCGCTGCTGAGATTGCCGATAAGTCAGCCGGATTCACCGCTCCACATCCCAACTATGGCTGCATCATCACCACCACATCCGGTGACGTCGCCGGCGAGGGCTTCCTTTACGGTCAGGGTACCGAATCTGCTGAGCTTCAAGCAATCGAAGCTGCCGGCGAGCGGTGCCGTGGTGCTACGGCGTTTCTCAATTTGGAGTCCAGTGATTGCCCCAGCGACAATACTGCTGTGGCCGCTTTAGTCCAGGCAGGGATTGAAAGAGTAGTTGTTGGAATGCGGCATCCTTTGCAACATCTAAGAGGAAATGCTGTTAGGGCTTTAAGAAGCCAAGGGGTTCTCGTTGATGTTCTTGGAGAGGATCTAAAGAGTAGAACCGTAGAGGAAGCTCGGAAAGCATGTCTCCTTGTTAATGCTCCATTGATTTGTAAAGCTGCTTCTCGAGTGCCTTTCTCTGTACTTAAATATGCCATGACCCTTGATGGGAAAATTGCTGCAAGTTCTGGTCATGCAGCATGGATTAGTGGTGTTTCATCTAGACAACGAGTTTTTCAATTACGAGGAAGAAGTGATGCTGTTATAGTCGGAGGCAATACCGTACGCAGGGATGATCCTAGACTGACTGCAAGACATGGTGGTGGGCATATTCCTCTACGTGTTGTGATGTCAAGGACTCTCAATCTTCCTGAACAAGCAAATGTTTGGGACACAAAGGGTATGTCAACCATGGTTGTAACACAAAGGGGTGCTAAAAGAAGTTTCCAGAAATTGCTTGCATCAAAAGGAGTTGAAGTAGTTGAGTTTGATAATCTAAACCCTCGAGATGTAATGGAATATTTTCATGATCGTGGATTTCTTTCAATTTTGTGGGAGTGCGGAGGAACACTTGCAGCTTCAGCCATTGCGAGTGGAGTAATACATGAGAGTCTTGCGACCACAATTGTTCTCCTTGTCATTCCACATTTTGACATTCTTTCGCATTTTCAAATCCCACCAACCTCTACTTCCACTTCTCTTCCCAACGTTAGTTTCCTTAGCTTTGTAAGTCCTTTAAGATATTTTAGGAACCTCTTCCCATCTTTAGGAGCTCCAACAGATACTGGTAGAAGCATATCTTTTGCCTCTTCTCCAGTATTTTGTATGTATAATTTAATTCACATTGAAATAACATTTTGGTTCTTGTACTTTAGGACTTGTTCCATTTTAGTTTTTGTACCTTCAAATGTTTTTGCATTTGTTGCTCCTAAGATTATTGGGGGGAGGAATGCCCCATCTCCTGTCGGTGAGCTTGGGATGGTTGAAATGTCTCAAGCTTTGGAACTAATTGATGTTGAATATGAGAAGGTTGGAAAGGACATGTTAGTTAGTGGATTTCTTCAACCAATATTAGATGTTGCTCCAGTAATCCCATCCTGTGATGAAACCATTGCAATTGACCCAACAGTTACTCCCTATGAGCCGAGTATTATATTCTTTTACAAAACATGGGATCCTTATGGCGCTTTTTCAAACTTTTCACGTCACCCCATTCAACTCACTGATGAAAATGGCAATGATTGCACTTGGTTGACTGTAGAGCATTATTATCAGGCTCACAAATTTGTCGGTATTGATGATCCTGTAGCTCAGGATTGTGTGGAAAAGATAAAATCGGCAAGAAGTCCAGAAGAAGCAGCAAGGATAGGAAGATCAATGCAGAGGCAGCACCCTAAAATGGTATTTTGTGGGTTCTGTTGGGTTTTGGAAGCCAGAGCGTTGTGGAGAATGCTTGTAGAGCTCTTTGCTAGAATAGTTTATTTGATAGGAACTGAAGGCATCTTTCAGACATGGAAAACTTCGTTTAATATCAACATCTCCCAATTTTCATTGCAGATACGATCTGATTGGCGAACTGCCAAACTCGACATTATGTACCGAGCATTGAAATGCAAATTTTCAAGTTACCCTCATCTGAAATCTATGCTGCTATCAACTGCTGGATCTGTTCTTGTTGAAGCATCACCACATGATCTTTTCTGGGGTGGAGGCCGAGATGGAGAAGGTCTAAACTACCTTGGAAGACTTCTGATGCAACTGAGAGCCGAGTTCCTTGGCCAGTCATCAACACCGAACGGTAGCAGCACAGAGTTCAACTGA 2445 43.35 MIIAYWLRNEAYLFFSIFFKKKKKKKKIVGGYNLTNLKKPEEFGFTITKKLSKSPIPMVFTLGASFPIIHANRLPTAVVSAAATTANPSSNSSTSHLFEATFIRRAAEIADKSAGFTAPHPNYGCIITTTSGDVAGEGFLYGQGTESAELQAIEAAGERCRGATAFLNLESSDCPSDNTAVAALVQAGIERVVVGMRHPLQHLRGNAVRALRSQGVLVDVLGEDLKSRTVEEARKACLLVNAPLICKAASRVPFSVLKYAMTLDGKIAASSGHAAWISGVSSRQRVFQLRGRSDAVIVGGNTVRRDDPRLTARHGGGHIPLRVVMSRTLNLPEQANVWDTKGMSTMVVTQRGAKRSFQKLLASKGVEVVEFDNLNPRDVMEYFHDRGFLSILWECGGTLAASAIASGVIHESLATTIVLLVIPHFDILSHFQIPPTSTSTSLPNVSFLSFVSPLRYFRNLFPSLGAPTDTGRSISFASSPVFCMYNLIHIEITFWFLYFRTCSILVFVPSNVFAFVAPKIIGGRNAPSPVGELGMVEMSQALELIDVEYEKVGKDMLVSGFLQPILDVAPVIPSCDETIAIDPTVTPYEPSIIFFYKTWDPYGAFSNFSRHPIQLTDENGNDCTWLTVEHYYQAHKFVGIDDPVAQDCVEKIKSARSPEEAARIGRSMQRQHPKMVFCGFCWVLEARALWRMLVELFARIVYLIGTEGIFQTWKTSFNINISQFSLQIRSDWRTAKLDIMYRALKCKFSSYPHLKSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMQLRAEFLGQSSTPNGSSTEFN 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19204767 19213237 - ClCG03G010600.2 Cla03g01013 269513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01013 814 Pfam RibD C-terminal domain 255 412 IPR002734 GO:0008703|GO:0009231
Cla03g01013 814 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 97 211 IPR002125 -
Cla03g01013 814 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 76 481 - -
Cla03g01013 814 SUPERFAMILY Cytidine deaminase-like 100 220 IPR016193 GO:0003824
Cla03g01013 814 Gene3D Cytidine Deaminase, domain 2 98 227 - -
Cla03g01013 814 Pfam NADAR domain 594 799 IPR012816 -
Cla03g01013 814 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRR, CHLOROPLASTIC 76 481 - -
Cla03g01013 814 SUPERFAMILY Dihydrofolate reductase-like 253 419 IPR024072 -
Cla03g01013 814 SUPERFAMILY YbiA-like 580 673 IPR037238 -
Cla03g01013 814 Gene3D Dihydrofolate Reductase, subunit A 245 450 IPR024072 -
Cla03g01013 814 Gene3D Dihydrofolate Reductase, subunit A 510 561 IPR024072 -
Cla03g01013 814 SUPERFAMILY YbiA-like 722 800 IPR037238 -
Cla03g01013 814 CDD NADAR 591 797 IPR012816 -
Cla03g01013 814 Gene3D - 584 804 IPR037238 -
Cla03g01013 814 TIGRFAM ribofla_fusion: conserved hypothetical protein 728 798 IPR012816 -
Cla03g01013 814 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 104 411 IPR004794 GO:0008835|GO:0009231
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01013 K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] - csv:101206129 654.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01013 Cla-Chr3:19204767 Cla06g00352 Cla-Chr6:4456440 4.12E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01013 Cam03g1067 Cec03g1064 Cco03g1059 Clacu03g1038 Cmu03g1628 Cre03g1329 Lsi06g00691 . Chy02g00677 Cme02g00904
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003622 1 2 1 1 1 1 2 1 1 2 1 1 2 2 2 2 1 1 1 1 1 1 1 3 2 2 2 2 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01013 Cla_Chr03 FPKM 10.140584 10.936064 9.464659 10.955931 14.206167 14.758156 16.055487 9.345046 8.502644 10.916229