Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01018 ATGTTGTGGAAAGCTTTTCATTCCCAAGAAGTATTAGGGCTTTTGAATGCAGGCATCAGGTGCTTGGAGCAAATGGCCTTGGTTACCACTGCAGAAGTTTGTGATGCTAATCCACAGCTCATTGTGAGTGGTGAACTTCGGGCCCTTGAACCAATTTTCCAGATATATGGTCGACGCCAAGTCTTTTCAGGACCAGTAGTCACACTGAAGGTATTTGAAGACAATGTTTTGATTCGTGAGTTCCTCGAGGAGAAGGGTAACGGCAGAGTTCTTGTCGTGGACGGGGGCGGGAGTAAGAGGTGTGCAATATTGGGTGGCAATCCTGTTGTCCAAGCTCAAAACAATGGTTGGGCTGGTATAGTTGTGAATGGATGTGTTAGAGATGTGGATGAAATAAATGGTTGTGATATCGGGGTAAGGGCTCTTGCGTCACATCCAATGAAAGCCTACAAAAAGCGGATTGGAGAAAAGCACGTTCCGATAACCGTAGCTGGGACAAGGATCATGGATGGGGAATGGCTGTATGCAGATACTGATGGGATTCTGGTTTCACGAACCGAGTTGTCCGTTTAG 573 46.6 MLWKAFHSQEVLGLLNAGIRCLEQMALVTTAEVCDANPQLIVSGELRALEPIFQIYGRRQVFSGPVVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSKRCAILGGNPVVQAQNNGWAGIVVNGCVRDVDEINGCDIGVRALASHPMKAYKKRIGEKHVPITVAGTRIMDGEWLYADTDGILVSRTELSV 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19414202 19416234 + ClCG03G010660.1 Cla03g01018 269518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01018 190 TIGRFAM NOT-MenG: RraA family 30 184 IPR010203 GO:0008428|GO:0051252
Cla03g01018 190 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 28 190 - -
Cla03g01018 190 Pfam Aldolase/RraA 30 183 IPR005493 -
Cla03g01018 190 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED 28 190 - -
Cla03g01018 190 SUPERFAMILY RraA-like 28 188 IPR036704 -
Cla03g01018 190 CDD RraA_family 31 184 IPR005493 -
Cla03g01018 190 Gene3D - 27 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01018 - - - csv:101210172 333.183
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01018 Cla-Chr3:19414202 Cla10g00363 Cla-Chr10:4850370 2.71E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01018 Cam03g1070 Cec03g1071 Cco03g1062 Clacu03g1041 Cmu03g1631 Cre03g1332 Lsi06g00694 . . Cme02g00909
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001787 2 3 2 2 2 2 3 2 2 2 3 2 3 2 1 3 2 1 2 2 2 4 2 2 2 2 1 5 3 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01018 Cla_Chr03 FPKM 2.766343 3.865515 4.595015 5.371175 10.893806 9.922238 11.005166 3.60921 2.845842 3.401464