Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01024 ATGGAGGACTCAACAACCCCAACTTCTTCAACCCCTAAATTTTCAGATGATGGGGTTCTTGTTGATGCCAATGCCGGAAGCTTCGCTGAAAGACAAGCTTCCAAGAGAGGGAGAAATGGTTGTGTTCCTACAAGGGATTCCCCCATTCTTCCATCTCCTTGCCTCACTTTTCCCTCTGGAATCAGCCCAACTGTGTTTCTTGATTCCCCTATTATGCTGCTCAATACACAGGATTTGCCATCTCCAACCACTGGCACTTTTTCCATACATCAAATAAAAAACGAGCAATCATTGTTGAATCCTGTAATGCCTGAAGATGGAATTAGCCACAGCAGTGAGGATCCCTACTTCAGGTTCGCACCTCATGGGGGGCTTTGTAATCTTCAAAGCCTTTTGAGGCTTGAAAATCAGGAGAATGGTGATGTACCTCTTGTTATGGAGGAAGCTAGTGGGGATGAAGCTAGCCAAGAGGAGAGCTTTGATATCACTGTCATTGCCGTTTCAGAGATAAGTGAGCTTGGAGACATCATTGAGGAAAGCATTGATATTATTGATATCCCAGGCTCCTGCCATGATTTTTGCAAATATGGTACAAAACATGCTCTTGAAGGGAAGCCTGCAAGTCCAGTCTTGAGAAAAGTTGAACCAGTTGGAGGTGATGACCGGGATTTGAGGAGGATTATAGTTCCATTGGCAAAACAAAACAAAGTTTCAACTAGTCCAAAGTCCTCCCAGATTAACACCATAAATACTACTGACTTGGAGGAAGATATAGTATCTTCCCTTGAGATTGTTACTCCCTCTCCAAAAAGGCTTTTACCTTCCCTCAAGGAAGTGCAGGCTGAGGCAGTGCATTATAGTCGGACGAAACTTAATTTGTCTCTATCAAAGACATCTTCTTTTGCTGCGGCAGTTCACAAACCCCAAGAAATAAAGAAATTCAAAAAGAATGAAATAAAGGAAATGGCTCAAAATAGTGTTCATACCACCGAGTCATCTCGACCAAAATCTTCATATGCAACATACAACAGCTTGAAGCATGAACAAGAGGCAGATAGGATAGTGCCACCATTGTCAGTGAAAATGAACATTGTGCGGCTTTCTAGAAATGGAACTAGTTCTAAAATTTCATCGCATCTCCATCAGTATCCAAGGCCACCATGTGAACCCGTCCATGTGGAGCACTGTGGCTCTACCTTAGGAAATGATGTGAAAAAAAGTGAGAATTCGAAAGTGGAACACAGGCTTAAGACCCGTAGGATGATTCTAACTGATTCAAAAAATGGAGATAGCCAGTCTAGAAAGCTGAAGTTTAGGAAGGGGAGGATGGTTGACCTTCAAGCTAAAACCAGTACACCAAGGGGGCTTAAATTTGGGCATGATTCGAGAGGGAAGGAAGAAATCCCAAATTTGTTTAATAATGTCATTGAAGAGACGGCAAGCAAGCTTACACAGACCGGGAAGAGTAAGGTCAAGGCTATGGAAGCTGACATTGATCACCAAGCCTTTGAATCAGATAAAACACTGATGGATTTTGAATTCCTACCTGATTTTCCAAAAGAGGCTTCTGTATTGAAGTATGAAATTGCTCCAACCGCTGATAATAGTTGTTTTGATGGCAAGATTGCTAATGGCAACTGTGAGAATATGGAAAGTTGTCTTTCTTCTATAACTACTAATCAACCATGTATACCTGAAGAATCAACGAAAGGAGATGACATTGAGACGCAGCATCCTTTAGAAGATGAACAGAAAGGGTCTTACATTCCTATGGGAATGTTAAGGACATCAGAAGATGGATACAACTGGAGGAAATATGGGCAGAAACAGGTCAAAGGTAGCGAATATCCAAGAAGCTACTATAAATGTACACATTCAAATTGTCAAGTAAAGAAAAAGGTGGAGCGATCTCTTGATGGTCAAATAACAGAAATCATCTATAAGGGTGCTCACAATCATGCAAGACCTGATCCCAATCGTCGAGCCATGCTTGGATCCGTGCCAACTCCAGGTGATACTCCAGAAATTGGTGAAGGTGGTGGAAACCGTTCCAAACTTGAAGCTGGGCTGGCATGGAGAAACACTCAATATGGGATGAAGGATATCAAACTTATCTCAGATTGTAGTGTTGTTGACGGTCTAGAGAGGACATCCTCTGTATCAGTTGTGACTGAGCTTGCTTATCCATTGTTAAATCCCCAAGGGAAAACTGTTGGTGTTCTTGAATCGGTGGGAACGCCAGAGCTCTCATCCACACTTGCTAGTCATGATGATGATGATGGTGGTGGTGGTGACGATGATGATCTTACAACTCAGGGAAGTATTTCAGTTTGCACAGAAGCTGATGATGCCGAACCTGAATTGAAAAGAAGGCGAAAAGAGGGCAGTTCAATTGAGACAAACTTGGCTTCAAGATCTGTACGTGAACCAAGAGTAGTTGTCCAAATTGAAACTGAAGTTGACATACTTGAAGATGGGTATCGGTGGCGGAAGTATGGGCAAAAAGTTGTCAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGCACTAGTGCAGGCTGTTTAGTAAGGAAACATGTTGAGAGAGCATCACATGATCTGAAATGTGTTATTACAACATACGAAGGAAAACACAATCATGAAGTGCCTGCAGCAAGAAATAGCGGTCAAGTAAACTCGAGTAATGGCAATGCCCAACCGTCTGCTTCTCATGTGCAACCGAACATGGGTTTGTCCAGAAACTCAAACGTCCCAAAGTCTGAAACACAAATTCAAGATCTTGCTGCCCAGTTCTATCCAAAACCAGAATTTAACCATGACTATCAGAGGTCTGGTTGTTTTGACACTTTTACAAATGATATCAAACTTGGAGCTCCTTCATTCTGTCAAATGAAGTTCCCTCCACTCCGAAACACCTTGCCTTATAGTTCCTTTGGATTAAATTCAAAGCATACTGGAACAAGTATGTCTGGTTCTTTGGCATCCGTGGTCCCAGACTTTCCGATTTCCTTGCCATTGAACCAGAACCTTTCAGCTGCTGGTTATGATTTTACCAATGGAAGACCAATACCACCATTTCAGGTTTTCCTGGCTGGTCAGCAGCTGAGGGACACAGATAGATTCCTCACACCCAAACAGGAGCATGACGACGATAACATCTGTGCTTCTTTCCAACCAGTTGTTGATACATTCGTTGTAATTACTCATATATCCATAATTCAATGTTCACGAATCCATATAGTTTCCACAGAACTCTGCCTCAAAGCTCTTGAAAGTTCTAAATTAAATTTCTCAGAGGCATCTTACGATCAACCAACATGTCCCTCACTCAGTAGAGCTCAAGTTCTGATGACCATTACAGAACAGACAATTCATGTGATGAAGAATGGCCATGGGAAATCATGTCACTTCTCAGATGGCTATTTTGCTCAACGCTGCCTACCACATAAGGTTAGATTCTTGAACTGCTTACTAATGAAAGAGGCATTTGGAAAGCAATTGAAGAAAATTTCAGCAGTGTCTTGCAAATCTTTAATTGGTGAACAAAAACTACCTTTACAAAGTACTAAAACAGGCTATTCTAAAAATGGATGA 3594 41.79 MEDSTTPTSSTPKFSDDGVLVDANAGSFAERQASKRGRNGCVPTRDSPILPSPCLTFPSGISPTVFLDSPIMLLNTQDLPSPTTGTFSIHQIKNEQSLLNPVMPEDGISHSSEDPYFRFAPHGGLCNLQSLLRLENQENGDVPLVMEEASGDEASQEESFDITVIAVSEISELGDIIEESIDIIDIPGSCHDFCKYGTKHALEGKPASPVLRKVEPVGGDDRDLRRIIVPLAKQNKVSTSPKSSQINTINTTDLEEDIVSSLEIVTPSPKRLLPSLKEVQAEAVHYSRTKLNLSLSKTSSFAAAVHKPQEIKKFKKNEIKEMAQNSVHTTESSRPKSSYATYNSLKHEQEADRIVPPLSVKMNIVRLSRNGTSSKISSHLHQYPRPPCEPVHVEHCGSTLGNDVKKSENSKVEHRLKTRRMILTDSKNGDSQSRKLKFRKGRMVDLQAKTSTPRGLKFGHDSRGKEEIPNLFNNVIEETASKLTQTGKSKVKAMEADIDHQAFESDKTLMDFEFLPDFPKEASVLKYEIAPTADNSCFDGKIANGNCENMESCLSSITTNQPCIPEESTKGDDIETQHPLEDEQKGSYIPMGMLRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCQVKKKVERSLDGQITEIIYKGAHNHARPDPNRRAMLGSVPTPGDTPEIGEGGGNRSKLEAGLAWRNTQYGMKDIKLISDCSVVDGLERTSSVSVVTELAYPLLNPQGKTVGVLESVGTPELSSTLASHDDDDGGGGDDDDLTTQGSISVCTEADDAEPELKRRRKEGSSIETNLASRSVREPRVVVQIETEVDILEDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKCVITTYEGKHNHEVPAARNSGQVNSSNGNAQPSASHVQPNMGLSRNSNVPKSETQIQDLAAQFYPKPEFNHDYQRSGCFDTFTNDIKLGAPSFCQMKFPPLRNTLPYSSFGLNSKHTGTSMSGSLASVVPDFPISLPLNQNLSAAGYDFTNGRPIPPFQVFLAGQQLRDTDRFLTPKQEHDDDNICASFQPVVDTFVVITHISIIQCSRIHIVSTELCLKALESSKLNFSEASYDQPTCPSLSRAQVLMTITEQTIHVMKNGHGKSCHFSDGYFAQRCLPHKVRFLNCLLMKEAFGKQLKKISAVSCKSLIGEQKLPLQSTKTGYSKNG 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19476497 19487578 + ClCG03G010700.2 Cla03g01024 269524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01024 1197 SUPERFAMILY WRKY DNA-binding domain 816 883 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g01024 1197 ProSiteProfiles WRKY domain profile. 818 883 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g01024 1197 MobiDBLite consensus disorder prediction 750 772 - -
Cla03g01024 1197 MobiDBLite consensus disorder prediction 25 44 - -
Cla03g01024 1197 Pfam WRKY DNA -binding domain 598 653 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g01024 1197 Pfam WRKY DNA -binding domain 824 881 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g01024 1197 SMART WRKY_cls 597 655 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g01024 1197 SMART WRKY_cls 823 882 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g01024 1197 MobiDBLite consensus disorder prediction 885 920 - -
Cla03g01024 1197 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 486 1039 - -
Cla03g01024 1197 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 46 150 - -
Cla03g01024 1197 Gene3D WRKY domain 592 657 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g01024 1197 ProSiteProfiles WRKY domain profile. 592 656 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla03g01024 1197 SUPERFAMILY WRKY DNA-binding domain 595 656 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g01024 1197 Gene3D WRKY domain 810 876 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla03g01024 1197 MobiDBLite consensus disorder prediction 883 920 - -
Cla03g01024 1197 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 486 1039 IPR044810 GO:0003700
Cla03g01024 1197 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 150 IPR044810 GO:0003700
Cla03g01024 1197 Pfam Plant calmodulin-binding domain 406 494 IPR012417 GO:0005516
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01024 K18835 WRKY2; WRKY transcription factor 2 - csv:101206605 892.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01024 Cla-Chr3:19476497 Cla10g00374 Cla-Chr10:5003276 8.77E-96 dispersed
Cla10g02125 Cla-Chr10:36911290 Cla03g01024 Cla-Chr3:19476497 1.01E-13 dispersed
Cla11g00435 Cla-Chr11:5026415 Cla03g01024 Cla-Chr3:19476497 9.46E-10 dispersed
Cla03g01024 Cla-Chr3:19476497 Cla10g00433 Cla-Chr10:5809593 1.10E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0939 . Cone10ag0603 Cone3ag0629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01024 Cam03g1073 Cec03g1078 Cco03g1071 Clacu03g1044 Cmu03g1634 Cre03g1334 Lsi06g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005091 1 5 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 3 1 1 1 0 1 1 1 1 1 2 3 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60830 PF07839 CaM_binding 7.90E-08 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01024 Cla_Chr03 FPKM 8.214465 10.918036 2.378972 2.83228 18.316832 20.198042 18.35022 0.0 0.0 0.0