Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01026 ATGAAGCTCCAAGTCGCCGACGACGATCTCGACGCCCTTCTTCTTCCTCCTCCTAACTTCTCCATGGTTGAGGACGGCATTTTCCGATCCGGCTTCCCTCAGCCCCTCAATTTCCCCTTCCTCCGCACCCTCAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAAAGCTAATAATATCAAGCTTTTTCAATTCAAAATTGAAGGCAAAAAGGAGCCTTTCGTTTCGATTCCAGAGGATGCTATTCTTGAGGCTCTAAAAATCCTGATTGATTTTAGAACATTTTCTAATTTGTTTGCTATTTATCTCTGGTTTTCAGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGAGGAAAGCATCGAACAGGCTCGCTCGTTGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGAGTTCGGTGTTCGAGGAGTACCAGCGATTTGCAGGCATGAAATCGAGGGTGACGGATCTACAATTCATCGAGAAATTCGACATTGGGTCTCTGAGGCAATGTGTTTACAGCATCATATATCAGTATCAAGGTTATAGCTCAAACAAGAGGAGGCTGTTGTATAGAGAAGAAAACTTGCAAAAGCCTCAAACAACATCAGTTTAG 651 44.09 MKLQVADDDLDALLLPPPNFSMVEDGIFRSGFPQPLNFPFLRTLNLRSIIYLCPEPYPEENLEFLKANNIKLFQFKIEGKKEPFVSIPEDAILEALKILIDFRTFSNLFAIYLWFSDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLSSVFEEYQRFAGMKSRVTDLQFIEKFDIGSLRQCVYSIIYQYQGYSSNKRRLLYREENLQKPQTTSV 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19567511 19569348 - ClCG03G010730.1 Cla03g01026 269526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01026 216 ProSitePatterns Tyrosine specific protein phosphatases active site. 125 135 IPR016130 GO:0016311|GO:0016791
Cla03g01026 216 PANTHER TYROSINE-PROTEIN PHOSPHATASE 116 199 - -
Cla03g01026 216 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 106 - -
Cla03g01026 216 CDD PFA-DSP_Siw14 19 176 - -
Cla03g01026 216 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 175 IPR029021 -
Cla03g01026 216 Gene3D Protein tyrosine phosphatase superfamily 13 179 IPR029021 -
Cla03g01026 216 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Cla03g01026 216 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Cla03g01026 216 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Cla03g01026 216 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Cla03g01026 216 Pfam Tyrosine phosphatase family 14 178 IPR004861 -
Cla03g01026 216 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 186 IPR020422 GO:0006470|GO:0008138
Cla03g01026 216 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 116 199 - -
Cla03g01026 216 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 10 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01026 Cla-Chr3:19567511 Cla09g01043 Cla-Chr9:11085324 8.07E-67 dispersed
Cla03g01026 Cla-Chr3:19567511 Cla02g01771 Cla-Chr2:32683792 7.78E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01026 K18045 - csv:101211082 357.066