Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01032 ATGAGACGTAAAATGGAGAGATTAGTTCTTCTTCCTTTCTCTGTGGGATGCATCTCTGAATCGAGTGTTGCTGTGGGAATTCAACACAATGCAACAACTTCCAAACCACACCCCATCTCTTCTCCTACATCAAAGAGTGAGAAAGATGAAGATGTTAAAGAAGTTGGTGGTGAAACCTTACTAGAGGAAAGCTTGAAGAACTCTCAAAGGTTCACAGCACTTGCAAAGCCTAATATTGGAGTTGGCTTTCATAGGCTTTACAAAGGTTTCAAGAACATCTCTCAATTATTTGTGTACAAAGAGGAGATGGAAGAAATGGAGATGGATATGGAAATAGGATCTCCCACAGATGTGAAGCATGTGACACACATTGGATGTGATGCTACCACAAGAGATGATGCCAACTCTTTCATTGCTTGGGAAACTCTTCTAGCTTCTTCTTCTTGGAAGCAATTTGATGATCAACTTTGA 471 40.34 MRRKMERLVLLPFSVGCISESSVAVGIQHNATTSKPHPISSPTSKSEKDEDVKEVGGETLLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGSPTDVKHVTHIGCDATTRDDANSFIAWETLLASSSWKQFDDQL 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19777577 19780301 + ClCG03G010790.1 Cla03g01032 269532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01032 156 ProSiteProfiles CRIB domain profile. 112 125 IPR000095 -
Cla03g01032 156 Gene3D CRIB domain 107 148 IPR036936 -
Cla03g01032 156 Pfam P21-Rho-binding domain 111 151 IPR000095 -
Cla03g01032 156 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC4 1 152 - -
Cla03g01032 156 MobiDBLite consensus disorder prediction 42 56 - -
Cla03g01032 156 MobiDBLite consensus disorder prediction 29 56 - -
Cla03g01032 156 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC2 1 152 IPR044509 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01032 - - - csv:101211330 280.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01032 Cla-Chr3:19777577 Cla08g00382 Cla-Chr8:10163287 1.36E-18 dispersed
Cla03g01032 Cla-Chr3:19777577 Cla03g00461 Cla-Chr3:5195043 6.48E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01032 Cam03g1080 Cec03g1084 Cco03g1075 Clacu03g1054 Cmu03g1642 Cre03g1342 Lsi06g00705 . . Cme02g00916
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012923 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01032 Cla_Chr03 FPKM 0.288591 0.624615 0.103129 0.07262 0.50749 0.12654 0.322319 0.079875 0.067692 0.0