Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla03g01037 | ATGGAGTACGATTCTGGAATTCCTATGTCTGTGACGGAGGGACACTCCTCTGCCCTTACACCATCCTTGCGCGAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAAGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGGCACGTATTTATTTCATTATCTTTACTTATTACTACCTGAAGACAGGAACTTGCAAGTTCGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTCGCCTTAAATATTTTAGGCTATCCACTCCGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGGTCTCCTATTTATCCAACCGTACAATCACCAACTCCTGGTCAGCAATCATATCCAGGAGGAAGTACAAATTGGTCAAGGGCTTCATTTATTCCTAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATATTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTTAATGATCAGCTAGGATCGGTTTCATCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCGTTTGTCGATTTCATCATCCCAGAGAAAGAGTACTTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTTCCATTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGCTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATACAATCTCTCTGCAGCATCATCAGCCAATGCCCCAGTTCAGCATTTGTTTGGGACGTCTTCGGGAACAACTGCACTGAACCTATCATCTGAGGGGCTAGGCGAAGCAGGATCTGCAAAGCCGAGGCGGTTATCAATCTCTGAGACTCGAGAGATACCATCTGACGATGAAAATATCAACACCGAGGGCTGA | 1245 | 45.3 | MEYDSGIPMSVTEGHSSALTPSLREGSLANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQARIYFIIFTYYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTSSGTTALNLSSEGLGEAGSAKPRRLSISETREIPSDDENINTEG | 414 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 19840153 | 19852445 | + | ClCG03G010840.1 | Cla03g01037 | 269537 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla03g01037 | 414 | SUPERFAMILY | CCCH zinc finger | 278 | 303 | IPR036855 | GO:0046872 | |
| Cla03g01037 | 414 | Gene3D | - | 264 | 349 | - | - | |
| Cla03g01037 | 414 | Gene3D | - | 51 | 110 | - | - | |
| Cla03g01037 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 274 | 302 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 320 | 348 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | Gene3D | - | 112 | 191 | - | - | |
| Cla03g01037 | 414 | MobiDBLite | consensus disorder prediction | 381 | 414 | - | - | |
| Cla03g01037 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 53 | 81 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | MobiDBLite | consensus disorder prediction | 255 | 274 | - | - | |
| Cla03g01037 | 414 | MobiDBLite | consensus disorder prediction | 255 | 271 | - | - | |
| Cla03g01037 | 414 | PANTHER | PROTEIN PHOSPHATASE RELATED | 27 | 267 | - | - | |
| Cla03g01037 | 414 | PANTHER | PROTEIN PHOSPHATASE RELATED | 266 | 413 | - | - | |
| Cla03g01037 | 414 | SUPERFAMILY | CCCH zinc finger | 156 | 182 | IPR036855 | GO:0046872 | |
| Cla03g01037 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 116 | 136 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | SUPERFAMILY | CCCH zinc finger | 58 | 81 | IPR036855 | GO:0046872 | |
| Cla03g01037 | 414 | SUPERFAMILY | CCCH zinc finger | 323 | 347 | IPR036855 | GO:0046872 | |
| Cla03g01037 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 154 | 182 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | SMART | c3hfinal6 | 53 | 80 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | SMART | c3hfinal6 | 154 | 181 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | SMART | c3hfinal6 | 274 | 301 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | SMART | c3hfinal6 | 112 | 135 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | SMART | c3hfinal6 | 320 | 347 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 276 | 301 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 116 | 135 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 322 | 347 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 157 | 181 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 55 | 80 | IPR000571 | GO:0046872 | |
| Cla03g01037 | 414 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED | 27 | 267 | - | - | |
| Cla03g01037 | 414 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED | 266 | 413 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01773 | Cla-Chr2:32734517 | Cla03g01037 | Cla-Chr3:19840153 | 3.16E-92 | dispersed | |
| Cla03g00322 | Cla-Chr3:3837345 | Cla03g01037 | Cla-Chr3:19840153 | 5.36E-11 | dispersed | |
| Cla03g01037 | Cla-Chr3:19840153 | Cla05g00632 | Cla-Chr5:5863747 | 9.75E-95 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60831 | PF00642 | zf-CCCH | 2.80E-10 | CL0537 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla03g01037 | - | - | csv:101221929 | 830.476 |