Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01043 ATGGTTTCTATATCGGGTTCGGTGTTCTTCCCATTAACTGTACCCAATTGTTCCTCTAGATCGCGTAAAGTAGCTGTTCTTGATGCGCACAATTCGTTCTTTTGTAAGAAAAAGGACCAGAGAAGGATTGTTGTTTGTAATTGCATTGCGCCTCCGCCGTACTTCAAGAGTGATGGGTCATCTGCCGTAAATTCCAATGACTCGTTTAGATCAGAACATTTAAGCCCAGATAATGATGACAAGGATGAGTCTGATGTTCTCATTGAGTGTAGAAATGTCTACAAATCGTTTGGAGAAAAACATATATTGAGAGGTGTGAGCTTCAAGATTAGGCATGGAGAAGCTGTCGGAGTAATTGGGCCTTCTGGTACCGGGAAGTCTACAATACTGAAGATCATTGCAGGTCTTCTTTCTCCAGACAAGGGAGAGGTATATATTCGAGGCAGAAAGCGAGTTGGGTTGATCGATGATGAGGAGCTATCTGGTCTTCGAATTGGATTGGTTTTTCAGAGTGCGGCACTTTTTGACTCGTTAACTGTTCGACAAAATGTTGGTTTCCTTTTGTATGAAAATTCAAGCTTGTCTGAAGATCAAATTTCAGAACTGGTAGCTGAGAACTTAGCTGCTGTTGGGCTGAAGGGAGTTGAGGATCGGTTACCTTCTGAATTATCAGGTGGAATGAAGAAGCGAGTTGCTTTAGCTAGGTCTATTATTTTTGATAACACAAGGAAAGAAATTGAGCCAGAGGTGCTCTTATATGATGAACCAACTGCTGGACTTGACCCAATTGCATCAACTGTTGTTGAAGATCTTATACGTTCTGTACATATTAAGGGTGAGGATGCTAGTGGAAAGCCAGGGAAGATTGCGTCTTATATTGTAGTCACCCACCAACACAGTACCATTAGGAGAGCTGTTGACAGGTTAATATTTTTATACGAGGGAAAGGTTGTCTGGCAAGGAATCACTGATGAATTTACAACGTCGACAAATCCAATAGTTCAACAGTTTGCGTCGGGAAGCTTGGATGGTCCGATTAGTGTTTCTGTAGCAATAGGCAAATGTAAGATATTTAAATCATGGGATATGTGGGGATCATTTTTATTTTTCTGCAAAACCAAACAAAGAATCTCTAGGACTAAAATCCTG 1149 40.99 MVSISGSVFFPLTVPNCSSRSRKVAVLDAHNSFFCKKKDQRRIVVCNCIAPPPYFKSDGSSAVNSNDSFRSEHLSPDNDDKDESDVLIECRNVYKSFGEKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLVFQSAALFDSLTVRQNVGFLLYENSSLSEDQISELVAENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGEDASGKPGKIASYIVVTHQHSTIRRAVDRLIFLYEGKVVWQGITDEFTTSTNPIVQQFASGSLDGPISVSVAIGKCKIFKSWDMWGSFLFFCKTKQRISRTKIL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20034197 20054348 - ClCG03G010900.1 Cla03g01043 269543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01043 383 SMART AAA_5 112 316 IPR003593 -
Cla03g01043 383 MobiDBLite consensus disorder prediction 59 82 - -
Cla03g01043 383 Gene3D - 75 341 IPR027417 -
Cla03g01043 383 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 3 347 - -
Cla03g01043 383 ProSitePatterns ABC transporters family signature. 223 237 IPR017871 GO:0005524
Cla03g01043 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 329 IPR027417 -
Cla03g01043 383 Pfam ABC transporter 103 258 IPR003439 GO:0005524
Cla03g01043 383 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 88 339 IPR003439 GO:0005524
Cla03g01043 383 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 3 347 - -
Cla03g01043 383 CDD ABC_Org_Solvent_Resistant 88 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01043 - - - csv:101220756 649.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01043 Cla-Chr3:20034197 Cla06g01384 Cla-Chr6:27338831 6.88E-24 dispersed
Cla11g00901 Cla-Chr11:15359457 Cla03g01043 Cla-Chr3:20034197 1.09E-07 dispersed
Cla03g01043 Cla-Chr3:20034197 Cla04g01146 Cla-Chr4:26663833 1.09E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g832 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01043 Cam03g1088 Cec03g1096 Cco03g1087 Clacu03g1066 Cmu03g1649 Cre03g1353 Lsi06g00723 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006421 1 0 0 1 1 1 2 2 1 1 1 1 2 0 1 2 1 2 1 2 1 1 1 2 2 2 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01043 Cla_Chr03 FPKM 0.0 0.0 0.220718 0.0 1.203805 1.091354 1.482149 0.0 0.0 0.0