Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01076 ATGCTGAACTTCACAGCATTCCCGTACGAACCAACAGGCGAATGCACAAGCAAGGACGACGAAAAAATATCCGTATGGGATGCCATGTACACCACCCGCTGCTGCCGCAACGCCCTCAACGCCGCTGCCAAGGCTTTAGCCCTAAACCTCAATGCCGGCAACGCCACCACATCCCTATTTCTTTCACAGCAGCAATGGGAGAACTGCAGTGGCCCCTTCTCCCGCCAGCCCTCCGTCTCCCTCGAGGGCTGCGGCCTCCAGAGTTTGTACACCGGCGGCAGCCGCTGCTCCACGCTCCTCTTCTTGCCTAAGCTCCTGCAGAGCAAAGTTTACGAGGCGGCGGTGCAGAACTGCTCTGGGTTTGCAGCGGCGGAGTTTGATGGGGTTTGCGGTGGCTGTTTGGCTGCGGTGGCGGAGGTGAAAAGGGCAATGATGGATGATTTTGGGGTTAGGGGTGATGATCAAAATGAGAATGGTGCTTGTGGGTTTGCTGCTGTTGTTGCCGTTGCCGCTGGTAGGATTGGGAATCGCTCCGATTTTGACGGCTTATTCCAATGCTTGCCGGCTTTGGACACTTCTAATTCAGTAGCAAAGGCCATAGTGGCAGCCATAGCGGTCGTGGTGGTTCTGCTACTCATCGTCCTTCTAGTAAAGCACGCTAGCAAGAAGAAGAAGAAGAAGGCTAAACCATCGGCCTCAAACGACACATCAATGTGGTCGGGACTGTATCGGTTTGCAAAGGAGGAGATCGATAGGGCACTTGACTTCGGGAGCGAGAGGACCAGCCTAGGGAGGGGCAGCGCCGGGCAGGTGTACAAGGGGATACTGCCCAGCGGACAGCAGGTAGCCATTAAAAAGATATTCCAGAGCAACACGTCGGATTCATTCATTAGAGAAGTTGAAGGGCTGTCTAGGGTTCGCCATCCAAATTTGGTGTGCCTCTTGGGGTGCTGCATTGAGAATGGGGAGCAGTATCTTGTGTATGAGTATTGTGAGCAAGGCAACCTGGCTCAACATCTCTTGAGAAAAGACACAGTTCTAACATGGGAATTAAGAGTAAAGATTTTGAGAGATTGTGCGCTTGCACTGAGGTATCTCCATCTACGTGTTGATGGCTGCATTGTCCATAGAGATATTAAGTTGACCAACATACTTCTGACTGAGAAATTAGAGCCCAAACTGTCAGATTTTGGGTTGGCAAGGATGTTGGGAATGGATGAAACAAAAGTATTCACAGATGTTAGAGGAACCATTGGTTATATGGATCCTGAATATATGAGCAATGCCAAGCTCACTTGTGCAAGTGATATTTATAGTTTTGGCATTGTGGCTCTTCAGCTCTTATCTGGTCAAAAGGTCATTGACTTGGATCTTGATGCAAGAGATCAATTGACAAGAAAGGCTAAGGATGTAAACATGGGGTTACGAGCAATTAGTGATTTTGAAGATCCAAGATTAAAAGGAAACGTAAATAAAGCAGATTTTGAATCCATTTTACAAATTGCTGTTCTTTGTGTGGCAAAATCAAGTAAAGGAAGACCCACAATAGACATCGTCTTTGAGGAATTGGACAAAGCTTGGCACAATACAATCGCCAACGAGCGCCGCGGCAGCGCCGTCCAAGCGCCGCAACACTGTGATGTGTTCAACAAGGATGCGTCGAGGCAGCGCCATCTCGGCGCCGCGATGCTACTATGCGTCCAGAACGATGCGTTCATGTTTCAGCGCCGCGGTAGCGCCGTCTCGGCGCCGCGGTGCTACTATGCATCCAGAATGATTCGTTTATGTTTTAGTGCTGCGGCAGCGCCGTCTCGGCGCCGCAGCGCTATCCCAAAATTCGCCCTTTTTAGTTTTTCAGCTCTTTTTCACCGTATTCTTGCTCGGCTTTGA 1890 50.0 MLNFTAFPYEPTGECTSKDDEKISVWDAMYTTRCCRNALNAAAKALALNLNAGNATTSLFLSQQQWENCSGPFSRQPSVSLEGCGLQSLYTGGSRCSTLLFLPKLLQSKVYEAAVQNCSGFAAAEFDGVCGGCLAAVAEVKRAMMDDFGVRGDDQNENGACGFAAVVAVAAGRIGNRSDFDGLFQCLPALDTSNSVAKAIVAAIAVVVVLLLIVLLVKHASKKKKKKAKPSASNDTSMWSGLYRFAKEEIDRALDFGSERTSLGRGSAGQVYKGILPSGQQVAIKKIFQSNTSDSFIREVEGLSRVRHPNLVCLLGCCIENGEQYLVYEYCEQGNLAQHLLRKDTVLTWELRVKILRDCALALRYLHLRVDGCIVHRDIKLTNILLTEKLEPKLSDFGLARMLGMDETKVFTDVRGTIGYMDPEYMSNAKLTCASDIYSFGIVALQLLSGQKVIDLDLDARDQLTRKAKDVNMGLRAISDFEDPRLKGNVNKADFESILQIAVLCVAKSSKGRPTIDIVFEELDKAWHNTIANERRGSAVQAPQHCDVFNKDASRQRHLGAAMLLCVQNDAFMFQRRGSAVSAPRCYYASRMIRLCFSAAAAPSRRRSAIPKFALFSFSALFHRILARL 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21194294 21208602 + ClCG03G011200.2 Cla03g01076 269576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01076 629 SUPERFAMILY Protein kinase-like (PK-like) 233 523 IPR011009 -
Cla03g01076 629 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 40 10 538 - -
Cla03g01076 629 Gene3D Phosphorylase Kinase; domain 1 226 330 - -
Cla03g01076 629 SMART serkin_6 257 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01076 629 Pfam SPARK 2 142 IPR043891 -
Cla03g01076 629 Pfam Protein kinase domain 261 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01076 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Cla03g01076 629 ProSiteProfiles Protein kinase domain profile. 257 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01076 629 PANTHER OS01G0253100 PROTEIN 10 538 IPR045271 GO:0004714|GO:0006468
Cla03g01076 629 Gene3D Transferase(Phosphotransferase) domain 1 331 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01076 - - - cmos:111434334 828.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01076 Cla-Chr3:21194294 Cla05g02559 Cla-Chr5:36880979 8.23E-56 dispersed
Cla03g01380 Cla-Chr3:29250312 Cla03g01076 Cla-Chr3:21194294 6.64E-21 transposed
Cla04g00566 Cla-Chr4:19238799 Cla03g01076 Cla-Chr3:21194294 6.04E-08 transposed
Cla06g00893 Cla-Chr6:13773382 Cla03g01076 Cla-Chr3:21194294 7.06E-19 transposed
Cla03g01076 Cla-Chr3:21194294 Cla05g01437 Cla-Chr5:21018464 1.05E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01076 . . . . . . Lsi06g00730 . . Cme02g00934
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012648 0 0 0 1 0 1 1 1 1 2 1 1 1 1 2 1 1 2 0 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80444 PF00069 Pkinase 1.40E-46 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01076 Cla_Chr03 FPKM 103.709091 96.959549 94.102592 98.140656 92.297913 88.319061 123.696709 98.091942 106.642693 146.237854