Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01078 ATGTTATTGCAGCAAAAGCTAGTTGAAGACAATGAGAGAGTAAAAATATTCACACAAGAAGAACTTGAAGAAGCAACCAATAACTATAGTGAAAGTAGAATTCTTGGTGAAGGAGGGTATGGTACAGTTTATAAAGGAATACTCCATGGTAACACCGTTGTTGCAATCAAAAGGTCAAAGCAAATCGAAGCAAATTGGATCGAACAATTCATCAATGAAGTTATTGTTCTCTCTCGAATCAACTACAAAAATATTGTCAAGCTTCTAGGTTGTTGTTTGGAGACTGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCGAATGGGACGCTTTCATATCATATTCACAACAAATTAGATCATGGAGAATCACCTTGCCTTTCATGGGAAACTCGTCTGAAAATTGCTTCTGAAGTTGCTGGTGCTATATCTTACATGCATTCTATAGTTTCAACTCCCATTTTTCATAGAGATATAAAGTCCTTGAACATTCTTTTGGATGATAAGAATAGTGCAAAGGTTTCTGATTTTGGAATATCAAGATTTGTGTCATGTGATCGATCTCACCTGACCACAAAAGTGTTGGGAACAATTGGGTATATAGATCCTGAGTACTTCAAATCAAGTCAATACACTAAAAAGAGTGATGTTTATAGCTTTGGAGTGTTGATGGTAGAACTTTTAACTCGGAAGCTACCAACTTTTGCCAGAAATGATGGTGGAAACCTATTAGACTACTTCATTTCATTGGAAAGGACTAATGGACTTGTTGAAATTCTAGATGCTACATTGGTGAAGGAAGAGAGGATGGAGGTTGTTAACAATGTGGCAACACTAGCCATAAAATGTTTAAGATCAAATGGGAAAGAAAGGCCTACAATGAAGCAAACTAATCCTTCATTCTTTGAGATTTTGATTCTTCCTACTAATGTCCACCCAGAAACACCTGAGAATCTAACCAAACATTCAACAACTTCTGCTCAACCAGTTGTTGATCAAACTCAGGCATATCTCAATCTTTAG 1020 36.08 MLLQQKLVEDNERVKIFTQEELEEATNNYSESRILGEGGYGTVYKGILHGNTVVAIKRSKQIEANWIEQFINEVIVLSRINYKNIVKLLGCCLETEFPLLVYEFVSNGTLSYHIHNKLDHGESPCLSWETRLKIASEVAGAISYMHSIVSTPIFHRDIKSLNILLDDKNSAKVSDFGISRFVSCDRSHLTTKVLGTIGYIDPEYFKSSQYTKKSDVYSFGVLMVELLTRKLPTFARNDGGNLLDYFISLERTNGLVEILDATLVKEERMEVVNNVATLAIKCLRSNGKERPTMKQTNPSFFEILILPTNVHPETPENLTKHSTTSAQPVVDQTQAYLNL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21226667 21228186 - ClCG03G011220.2 Cla03g01078 269578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01078 339 Coils Coil 8 28 - -
Cla03g01078 339 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 296 IPR045274 GO:0007166
Cla03g01078 339 SUPERFAMILY Protein kinase-like (PK-like) 13 296 IPR011009 -
Cla03g01078 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Cla03g01078 339 PANTHER LYSM TYPE RECEPTOR KINASE 2 296 - -
Cla03g01078 339 ProSitePatterns Protein kinases ATP-binding region signature. 35 57 IPR017441 GO:0005524
Cla03g01078 339 SMART serkin_6 29 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01078 339 CDD STKc_IRAK 35 295 - -
Cla03g01078 339 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Cla03g01078 339 Gene3D Transferase(Phosphotransferase) domain 1 105 304 - -
Cla03g01078 339 ProSiteProfiles Protein kinase domain profile. 29 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01078 339 Pfam Protein kinase domain 29 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01078 Cla-Chr3:21226667 Cla11g01863 Cla-Chr11:32150679 1.48E-106 dispersed
Cla07g00546 Cla-Chr7:8819987 Cla03g01078 Cla-Chr3:21226667 4.30E-07 dispersed
Cla03g01078 Cla-Chr3:21226667 Cla04g00781 Cla-Chr4:22870003 9.58E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80445 PF00069 Pkinase 7.30E-50 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01078 - - mcha:111019878 473.781