Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01090 ATGAGAGCAATGAACTCTTCTCTTCCATTTCCTAACCAAACTTTCCTTAACCCTAACCCTAATATCCCTGATTCTTCACATTCCCAACCTCAAAATCCTCCCCTCGACTTGCCTTCTTCCCTTTCCTCCCTCGAAAACCTCATCCATGTCGCCAACCAAACCCTTCAGTCTCTCTCCTACCTCACACTCACCCCAAACTCCTCTCATTACGCCAACAATTCCGATCTTGTTCAGTGCCAATTTGATCGGCGCCACCGTGTCCCCCCGCATTCTCTCTTCCGCCACTCCCTCCGCTGCCCTTCCGCTTCCCTGCCTCGTATCGACCCGACCCAACTCCTCCAATCCTTGCTTTACCCCCAAACTCTTCATTCATCTCGTCAATTGGTTAATGAAAAGCGCTTCCCTCAAATGCTGCCGGATTCGGATGCCGACCTTTGCTTTTCTCTCAATGATTATACTGATGCTAGTTCCAATTTCTTCTATGTTGATTGCCCTGGCGTCGTTGCCTTGTCTAACCTGGATGAAATGTCCAAAGTCTTCACTCTTCCCCGTGTTTTGGCTGTTCATTGTGCTAATTTTGTTGGTAATGACGATCGAGAGATGAAGAGTACGTTGGAGGGGATACGAATACTTCCCTCTGACTTGTGGGTTCTTAGAAGTGAGGTAGAAATTTGGAATGACTACCCCAGTATGTATTCATTTGTTGTGCTTCGGTCCCTATTGGGGTCAGAGATGGCCATGGACAGCCATTTGATGACATGGATCATTGCAAATTCGCCTAGGTATGGTGTCGTTATTGATGTTGCTATGAGGGATCATATATTTTTGCTGTTTAGGCTGTGTTTTATGGCAATCTATAAGGAAGCTTTGGGATTTCAAATTGCATTGGTAAATGGTAATGGAATAGAGGGTGGATCAGCGAATAGCTGTTTTAAGTGTCCAATTTTGATTCAAGTATTAATGTGGCTAGCATCGCAGCTTTCCGTGTTGTATGGGGAAACGAGCGGGAAATTCTTTGCTATTAACATGCTTAGACAATGTATACTGGATGCCGCATTGCGGTTGTTGCTTTTACCATCGGAACCAAAGCCAGCAGAGAGTTTGACTTTAGCAGAGGGTTCTCATAATCTGGAAACTAGTTGTAGTGACACACAGAGTGTGAAGTTGAACGAATTGGATCAGAAAGTTGTAAATAATGGCAATGTTACTGGAAAAGAAACTGTCAATTGTAGGGTGATTCTTGTGTCCCAAGTGGCTGCAGCTGTTGCAGCATTGCATGAGCGGTTCCTACTTGAAGAAAAGATCAAAGCTTTACGATTTTCTCATCTGCAAACTAAATATCAGCGGGTTTCTGAGTATAACTATATCTCTCAAAGAGCTTGTGAAGAGCGTAAAAGACGTTGCAGCTATAGACCTATCATTGAGCATGATGGACTCCCAAAGCAGCAGTTTCACAATGAGGAGCTTTTGAGATGGCTGTTTCGTCATTCTTTTCCTGCACTTCCTACACCTCGTTCCATATTATTTTATATAAAAAAGAATAAACCTCCTGTAGCAATAAATGATGAAGCAGCAGCTGGCCAACTGCTTAATGTCCAGTTACTCATGATGTTTCCTGTCTGCTTGGTTTTTAAAAAGCAGGATACAAACAAGACCAAAACAAGGGAGGAGTTGTTGGCTGAAGAAAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAGGCAAAACGATCAACATTACAGGTTACAAGAGATATTATTGAGGAATACATGGAGGAGATTATGAAAGCTGGAGGAATTGGGTGCTTTGTGAAGGGACCTGAAGAGGGAGGGATAAAATCTGAACAACCAACTGATCATAACATTACAAGAAATATTATTGCTGATGGGCACACAAAAGGAAGCAATGACTCGTATGGAGATGCTAGACATAGCTCAAGTCATTCCAAGAAGCAGTCTAACTATGATAGTAGCTACTCGGGATCTCAGAAGCCACAGAAAGGTCATTATGGGCACTATGGCTGTCCAGAAGATGAAAGGAAAAGTTCCAGTAAGGACAAATATGATCGAGATCACTATCATAGGTTCTCAGATCAAAGCAGTAGTCCTAGCCAGTCACACAAATGGAAGAGATATCCAAGTGATCGAGATGATGAGGTGCCGGCAGAAACCAGGCATCATGAAACTAGAAAGCTGTCTTCTAGCAGCTCTAACTTTCATGGTTTTAGATCATCTTCATCCTCAAGGTCTGGGGGTGGTTCAAGTGCAAGGAAGGATGGGCATAAGTTGAGAGCCAGTGATAATCGGAAAAGGAACATGGCAGATAATCACAGCTCAGAGCATTTGGTGTTTAATTCATTTAATGATAGGTACACCCCTTCCGAATGTCATGACCAATTGGAAGATGATTACTCCACTGTCAGCAAATTATCTAAATCCGGATGA 2451 43.08 MRAMNSSLPFPNQTFLNPNPNIPDSSHSQPQNPPLDLPSSLSSLENLIHVANQTLQSLSYLTLTPNSSHYANNSDLVQCQFDRRHRVPPHSLFRHSLRCPSASLPRIDPTQLLQSLLYPQTLHSSRQLVNEKRFPQMLPDSDADLCFSLNDYTDASSNFFYVDCPGVVALSNLDEMSKVFTLPRVLAVHCANFVGNDDREMKSTLEGIRILPSDLWVLRSEVEIWNDYPSMYSFVVLRSLLGSEMAMDSHLMTWIIANSPRYGVVIDVAMRDHIFLLFRLCFMAIYKEALGFQIALVNGNGIEGGSANSCFKCPILIQVLMWLASQLSVLYGETSGKFFAINMLRQCILDAALRLLLLPSEPKPAESLTLAEGSHNLETSCSDTQSVKLNELDQKVVNNGNVTGKETVNCRVILVSQVAAAVAALHERFLLEEKIKALRFSHLQTKYQRVSEYNYISQRACEERKRRCSYRPIIEHDGLPKQQFHNEELLRWLFRHSFPALPTPRSILFYIKKNKPPVAINDEAAAGQLLNVQLLMMFPVCLVFKKQDTNKTKTREELLAEERDYKRRRMSYRGKKAKRSTLQVTRDIIEEYMEEIMKAGGIGCFVKGPEEGGIKSEQPTDHNITRNIIADGHTKGSNDSYGDARHSSSHSKKQSNYDSSYSGSQKPQKGHYGHYGCPEDERKSSSKDKYDRDHYHRFSDQSSSPSQSHKWKRYPSDRDDEVPAETRHHETRKLSSSSSNFHGFRSSSSSRSGGGSSARKDGHKLRASDNRKRNMADNHSSEHLVFNSFNDRYTPSECHDQLEDDYSTVSKLSKSG 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21791948 21796208 - ClCG03G011330.1 Cla03g01090 269590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01090 816 MobiDBLite consensus disorder prediction 1 40 - -
Cla03g01090 816 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 48 KDA PROTEIN 545 797 IPR032845 -
Cla03g01090 816 MobiDBLite consensus disorder prediction 653 667 - -
Cla03g01090 816 Pfam U11-48K-like CHHC zinc finger 76 100 IPR022776 -
Cla03g01090 816 MobiDBLite consensus disorder prediction 757 779 - -
Cla03g01090 816 ProSiteProfiles Zinc finger CHHC U11-48K-type profile. 76 103 IPR022776 -
Cla03g01090 816 PANTHER UNCHARACTERIZED 545 797 - -
Cla03g01090 816 PANTHER UNCHARACTERIZED 18 488 - -
Cla03g01090 816 MobiDBLite consensus disorder prediction 780 795 - -
Cla03g01090 816 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 48 KDA PROTEIN 18 488 IPR032845 -
Cla03g01090 816 MobiDBLite consensus disorder prediction 673 699 - -
Cla03g01090 816 MobiDBLite consensus disorder prediction 630 816 - -
Cla03g01090 816 MobiDBLite consensus disorder prediction 711 735 - -
Cla03g01090 816 MobiDBLite consensus disorder prediction 736 756 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01090 K13156 SNRNP48; U11/U12 small nuclear ribonucleoprotein 48 kDa protein - csv:101218930 755.362
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0913 Cone1ag1670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01090 Cam03g1136 Cec03g1151 Cco03g1133 Clacu03g1113 Cmu03g1692 Cre03g1400 Lsi06g00751 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007212 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01090 Cla_Chr03 FPKM 6.869303 8.634055 9.380975 9.147618 14.133862 13.589872 13.143052 7.602678 6.035958 6.868685