Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01092 ATGTCCAAATTCCTGCTCTCTCACGCTTACCTTCTCACCCTTCCCCACAAAAACCATTCCTTTTCTCTCAACCATGGCGTCCTTCCCATCCGCTCAGTCCTCTCTGCTCCAGAGAAGCGAGGTAGGAAGAAGCGGCAGTCGCGGCAGCAACAATTCCACCCAAAGGACGACGATTCCACTGCACTTGAGAAGGCCCTCCGCTTCACTTTCATGGAGGAACTCATGGACCGCGCTAGAAACCGCGACCCTCTCGGCGTTTCTGATGTCATTTACGATATGCTTGCCGCTGGATTGAACCCTGGACCTCGCTCCTTCCATGGATTAGTTGTTTCTCATGCTCTCAATGGTGATACTGAGGGAGCGATGCAATCTCTGAGAAGGGAATTAAGTGCTGGACTTCGTCCTCTTCATGAAACGTTTGTTGCATTAGTTCGGTTATTTGGTTCCAAGGGTCTTGCTACTAGAGGCTTAGAAATCCTTGCAGCCATGGAGAAATTGAATTATGACATCCGTCAAGCATGGCTCATTCTTACTGAGGAACTTGTAAGAAACAAATATTTAGAAGACGCCAACAAAGTGTTCTTAAAGGGTGCCAAAGGGGGTCTCAGAGCCACCGACAAGATTTATGATCTTCTGATTGAGGAAGATTGTAAAGCCGGGGATCATTCAAATGCCTTAGAGATCTCATATGAAATGGAGGCTGCTGGGCGGATGGCAACAACCTTTCATTTCAATTGCCTTCTTAGTGTCCAGGCTACTTGTGGAATACCTGAAATTGCTTTCTCAACATTTGAGAACATGGAGTATGGAGAAGATTACATGAAACCTGATACTGAGACATATAATTGGGTGATCCAAGCATATACAAGGGCTGAATCTTATGATAGGGTGCAAGATGTTGCTGAGTTACTTGGCATGATGGTTGAAGACCACAAGCGTCTACAGCCGAACATGAGAACCTATGCGCTCTTGGTAGAGTGTTTTACTAAGTATTGTGTTTTACGAGAAGCTATTAGGCATTTTCGTGCACTAAAAACCTTTGAAGGTGGAACAAAAGCTTTGCATAATGAAGGGAATTTTGGTGACCCACTTTCCTTATATCTTCGAGCTTTATGTAGAGAAGGTAGGGTTGTTGAACTGTTAGATGCCTTGGAGGCTATGGCTAGAGATAACCAACAGATTCCTCCAAGAGCCATGATCTTGAGCAGAAAGTATCGATCACTGGTGAGCTCATGGATTGAACCTTTACAAGAAGAAGCTGAACATGGATTCGAGATAGACTACATTGCAAGATACATTAAAGAGGGTGGACTCACTGGAGAACGCAAGAGATGGGTCCCTCGAAGAGGAAAAACTCCTCTAGATCCTGATGCAGATGGATTCATCTATTCAAATCCTATGGAGACATCCTTTAAGCAACGATGTCTAGAAGACTGGAAGATGTACCACCGAAAGATTTTGAAAACCTTGCAGAATGAAGGACTTGCGGCTCTTGGGGATGCATCTGAAGCTGATTATCATAGAGTCGTGGAGAGATTGAAGAAAATAATAAAGGGTCCTGACCAAAATGTTTTAAAGCCAAAGGCTGCAAGTAAGATGATTGTATCAGAATTAAAAGAAGAATTAGAAGCACAAGGTTTACCAATTGACGGAACTAGAAATGTTCTTTACCAGCGTGTTCAGAAAGCAAGGAGAATTAACCGGTCTCGTGGTCGGCCCCTTTGGGTTCCTCCAGTGGAGGAGGAGGAAGAAGAGGTTGATGAAGAGCTGGATGAACTAATTTCACGAATAAAGCTACACGAAGGAAATACGGAGTTCTGGAAACGCCGCTTTCTCGGAGAAGGCTTGGACAGTAATAATGTTAAACCTTCTGAAGATGATATATCAGAACCTCTTGATTCTTTGGATGATGTTGACACTGTAGAAGACGTTGCAAAGGAGATTGAAGAAGAAGAAGCTGAGGAGGAAGAGGAGGTAGAACCAACTGAGAATCAAGATGGGGAAAGAGTTATTAAGAAGGAAATTGAAGCTAAGAAGCCTCTTCAAATGATAGGTGTTCAATTGTTAAAAGATGTTGACCAAACCACAACAACATCCAAAAAGTCGAGGAGGAGAAGTTCTCGAGCATCACTTGAGGATGATCGTGATGAAGATTGGTTTCCTGAAGATATATTTGAGGCATTTGAGGAGTTGCGAAAGAGGAAAGTCTTTGATGTATCTGACATGTACACAATAGCTGATGTCTGGGGTTGGACTTGGGAGAGAGAACTTAAGAACAGACCTCCCAGGAGGTGGTCACAGGAATGGGAAGTGGAGCTGGCTATTAAAATTATGCACAAGGTGATTGAATTGGGTGGAACACCAACAATTGGCGACTGTGCCATGATCTTGCGAGCTGCCATCAAGGCTCCTGTACCTTCTGCCTTCTTGAAAATCTTGCAGACAACTCATAGTCTTGGCTATGTATTTGGGAGCCCTTTATATGACGAGATTATCACCCTGTGCCTTGATCTTGGGGAACTAGATGCAGCCATTGCGATTGTAGCAGACCTGGAAACAACAGGAATCTTGGTTCCCGATGAAACACTCGATCGGGTCATCTCCGCTAGACAGACGAACGATGCTATGCCCAAGCCTGATTCAGCCATTGATACTACACTAAATGATCACAGTTTAGCCAATGATGATGAATCATAA 2697 44.01 MSKFLLSHAYLLTLPHKNHSFSLNHGVLPIRSVLSAPEKRGRKKRQSRQQQFHPKDDDSTALEKALRFTFMEELMDRARNRDPLGVSDVIYDMLAAGLNPGPRSFHGLVVSHALNGDTEGAMQSLRRELSAGLRPLHETFVALVRLFGSKGLATRGLEILAAMEKLNYDIRQAWLILTEELVRNKYLEDANKVFLKGAKGGLRATDKIYDLLIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFSTFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNMRTYALLVECFTKYCVLREAIRHFRALKTFEGGTKALHNEGNFGDPLSLYLRALCREGRVVELLDALEAMARDNQQIPPRAMILSRKYRSLVSSWIEPLQEEAEHGFEIDYIARYIKEGGLTGERKRWVPRRGKTPLDPDADGFIYSNPMETSFKQRCLEDWKMYHRKILKTLQNEGLAALGDASEADYHRVVERLKKIIKGPDQNVLKPKAASKMIVSELKEELEAQGLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDELISRIKLHEGNTEFWKRRFLGEGLDSNNVKPSEDDISEPLDSLDDVDTVEDVAKEIEEEEAEEEEEVEPTENQDGERVIKKEIEAKKPLQMIGVQLLKDVDQTTTTSKKSRRRSSRASLEDDRDEDWFPEDIFEAFEELRKRKVFDVSDMYTIADVWGWTWERELKNRPPRRWSQEWEVELAIKIMHKVIELGGTPTIGDCAMILRAAIKAPVPSAFLKILQTTHSLGYVFGSPLYDEIITLCLDLGELDAAIAIVADLETTGILVPDETLDRVISARQTNDAMPKPDSAIDTTLNDHSLANDDES 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21867987 21928798 + ClCG03G011350.2 Cla03g01092 269592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01092 898 Gene3D SAP domain 511 573 IPR036361 -
Cla03g01092 898 SUPERFAMILY SAP domain 530 566 IPR036361 -
Cla03g01092 898 PANTHER - 23 806 - -
Cla03g01092 898 Pfam SAP domain 531 563 IPR003034 -
Cla03g01092 898 SMART sap_9 530 564 IPR003034 -
Cla03g01092 898 MobiDBLite consensus disorder prediction 870 898 - -
Cla03g01092 898 ProSiteProfiles SAP motif profile. 530 564 IPR003034 -
Cla03g01092 898 MobiDBLite consensus disorder prediction 36 59 - -
Cla03g01092 898 MobiDBLite consensus disorder prediction 648 670 - -
Cla03g01092 898 Gene3D Tetratricopeptide repeat domain 71 213 IPR011990 GO:0005515
Cla03g01092 898 Gene3D Tetratricopeptide repeat domain 214 453 IPR011990 GO:0005515
Cla03g01092 898 MobiDBLite consensus disorder prediction 870 889 - -
Cla03g01092 898 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE 3 23 806 - -
Cla03g01092 898 Coils Coil 583 603 - -
Cla03g01092 898 Coils Coil 638 665 - -
Cla03g01092 898 MobiDBLite consensus disorder prediction 648 663 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01092 - - - csv:101209618 1632.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01092 Cla-Chr3:21867987 Cla11g01414 Cla-Chr11:27705986 1.33E-12 dispersed
Cla03g01092 Cla-Chr3:21867987 Cla05g01669 Cla-Chr5:28369815 3.70E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g777 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01092 Cam03g1138 Cec03g1154 Cco03g1135 Clacu03g1115 Cmu03g1694 Cre03g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009862 1 1 1 1 1 2 1 2 1 1 1 1 1 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01092 Cla_Chr03 FPKM 5.486915 6.532081 9.149884 8.588575 29.823568 30.917036 33.16515 11.554796 11.944525 11.882176