Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01101 ATGCGCTCACTGTTCATCTCCAAATTCCCAGTCAATTCCGCTTTTCTCCTCTCCAATTCCCGATTCCCAATCCCAATCGCCGTTTCCGACGCCTTCCGATCCCTTACTTTCCAATCCCTTCACCGATCTCCGCCCTCCCCCGCCTCACCTCCTCCGACAATGCCTCCCCGTCTGGCTATGATTTCTCATGTCGATTCCGAAGGCCCTCTCGCTAGAAGATTGTGGAATAAGTGCCGTAGAGAGTCGATACTCTCGATGTATACCCCATTTTGCGTTTGTCTCGCTTGCGGGACTCTCAATATTGATACATTTCGCCACTATATTGACCAGGATGTTCATTTTCTCAAGGCGTTTGCTCGGGCATATGAACTAGCTGCGGAATGTGCTGATGATGATGACGCAAAACATTCAATCAATGAGCTGAGAAAGGCCGTGTCGGAAGAACTGAAAATGCATGCTTCGTTTGTTAAGGAATGGGCTGCTGAAGATGGAAAAGAGTCTCCTGTCAACCCTGCTACAGTCAAATACACTGATTTTTTGTTGGCAACGGCATCTGGCAAGATTGAAGGAGCAAAAGCTCTTGGTAATCTTGCAACCCCATTTGAACGAACAAAGCTTGCTGCTTATATTCTTGGTGCCATGACACCCTGCATGAGGCTGTACGCCTATTTAGCTACAGAATTTAAGGGAGCTCTTGGTGCTTACCATGGTGATCACCTCTACAAGACATGGATCGAAAACTACTCATCTAAAGGTTTTGAGGAAGCAGCTGAGAGAACTGAAGACGTGCTTGAGAAACTTTCGGCAACTTTGACCGGTGAAGAGCTTGACACAATTGAGAAGCTTTATCACCAAGCTATGAAACTCGAGCAAGAATTTTTCTGCTCTCAGCCTGTTTCACAGAAGACAGTAGTTCCTTTGATTAAAGATCACAATCCTGCAGAGGATCGATTGGTACTGTTTTCTGATTTTGATTTGACATGCACTGTTGTTGATTCTTCTGCCATTCTGGCGGAAATTGCAATTGTAAGAGCTCCGAAACCTGATCAGACTCAGACTCAGACTCAGACTCAGACTCAGACTCAACCTGAAGATCAAATCATTACTCGGATGTCATCAGCCGACCTCAGAAACACATGGGGTGTTATTTCCAGGCAGTATACAGAAGAGTATGAGGAATGCATTGACAAAATCACGCCCCCTAAAACTGGGGAATTCAAGTTTGATGATCTGTGTACAGCACTTGAGCCACTCTCCGATTTTGAGAAAAGGGCAAATAATAGAGTGATTGAGTCTGGAGTACTTAAGGGCTTAAATTTTGAAGATATAAGACGAGCGGGTGAACATCTTATTATTCAAGATGGTTGTTTTAATTTCTTTGGAACCGCTTGTAAGAGTGAAAATTTGAATGTTGGTGTCCACATACTCTCTTACTGTTGGTGCGCGGATCTCATTAGGTCATCTTTTAATTCAGGTGGTTTACTAACTCAAGTGACTATACATGCCAATGAGTTTGCCTTTGAAGAAGCAGTTTCGACAGGTGATTTAGTTAGGAAGGTAGAATCTCCCCTTGATAAAGTCCATGCTTTCCGAAAAATCTTGGAGAACTATGGCAATGATAGAAAAAACCTTACGGTATACGTCGGAGACTCTGTCGGTGACTTGCTTTGCCTACTTGAAGCAGATATAGGAATTGTTATTGGGTCAAGTTCCAGTCTAAGGAGATTGGCAACTCGATTTGGAGTTTCTTTCGTTCCGTTGTACCCCAGCGTGATAAAAAAACAGAAAGATCTTACCGCAGAGACACGACGCAGTTGGAAAGGATTGTCTGGTGTCCTTTACACAGTCAATTCTTGGGCTGAAATCCATGCTTTTGTTCTTGGATGCTAG 1890 43.97 MRSLFISKFPVNSAFLLSNSRFPIPIAVSDAFRSLTFQSLHRSPPSPASPPPTMPPRLAMISHVDSEGPLARRLWNKCRRESILSMYTPFCVCLACGTLNIDTFRHYIDQDVHFLKAFARAYELAAECADDDDAKHSINELRKAVSEELKMHASFVKEWAAEDGKESPVNPATVKYTDFLLATASGKIEGAKALGNLATPFERTKLAAYILGAMTPCMRLYAYLATEFKGALGAYHGDHLYKTWIENYSSKGFEEAAERTEDVLEKLSATLTGEELDTIEKLYHQAMKLEQEFFCSQPVSQKTVVPLIKDHNPAEDRLVLFSDFDLTCTVVDSSAILAEIAIVRAPKPDQTQTQTQTQTQTQPEDQIITRMSSADLRNTWGVISRQYTEEYEECIDKITPPKTGEFKFDDLCTALEPLSDFEKRANNRVIESGVLKGLNFEDIRRAGEHLIIQDGCFNFFGTACKSENLNVGVHILSYCWCADLIRSSFNSGGLLTQVTIHANEFAFEEAVSTGDLVRKVESPLDKVHAFRKILENYGNDRKNLTVYVGDSVGDLLCLLEADIGIVIGSSSSLRRLATRFGVSFVPLYPSVIKKQKDLTAETRRSWKGLSGVLYTVNSWAEIHAFVLGC 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22218829 22223205 - ClCG03G011470.1 Cla03g01101 269601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01101 629 PANTHER SI:CH1073-67J19.1-RELATED 59 629 - -
Cla03g01101 629 Pfam TENA/THI-4/PQQC family 89 294 IPR004305 -
Cla03g01101 629 SUPERFAMILY HAD-like 314 585 IPR036412 -
Cla03g01101 629 PANTHER BIFUNCTIONAL TH2 PROTEIN 59 629 - -
Cla03g01101 629 SUPERFAMILY Heme oxygenase-like 69 294 IPR016084 -
Cla03g01101 629 CDD TenA_C_AtTH2-like 70 296 - -
Cla03g01101 629 Gene3D - 56 301 IPR016084 -
Cla03g01101 629 Gene3D - 317 581 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01101 K22911 TH2; thiamine phosphate phosphatase / amino-HMP aminohydrolase [EC:3.1.3.100 3.5.99.-] - csv:101217744 1115.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g742 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01101 Cam03g1149 Cec03g1167 Cco03g1155 Clacu03g1120 Cmu03g1707 Cre03g1421 . . . Cme02g00942
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004986 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01101 Cla_Chr03 FPKM 10.108109 9.896296 14.738424 13.831772 23.516537 18.74782 23.802568 11.467505 9.25878 11.488101