Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01150 ATGGATCAGACGGCTCCTAAGGTATGTTGTGCTTTTCTCCACTTTTATGTTCCTATGTTGGCAGTTAGCTGGATGTTGCAAGAAATCTGGGAAGTCCAGAATCATGGTGCAACTGAAATGAACTCAATTAACCGCGTGGAAAAGTTATTTGATTTTGTAGTCGAAAGGTGGTTTCTAGCTGTTGGTCAGTTCTTAGTCAACACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAAAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGAACCAGAAGCTGTTTCTATTCCTTCTGATTCACTTCAAACTTATGATGCATTGCATAGTCAACAAAATGATATAGAAGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTAGTTAGACTTCAAGCTCTTGTCAGGGGTCACGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTAATAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTCGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGACATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATTATCTGAGGGCAAAAGTAACACTAAATCTCATTTAAAGACTACTGCCAAGAAGACAAACTTAGTAACTGATCAATCAAACCTCTCGAGCCAAAAAACTGCTGCCTCGCATTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGATTCAGAAGCTCAAGCATAAACATGCACCTGAGAGGCCGTTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCACTGGTAAAGCAACCATGGCGAAGTCAATCAACGATAAACCGAAGTCAATTTCCAGATCAGGTGACTCAAAATCTGCAAAACCTAGATCGCTGAATTGA 1518 42.49 MDQTAPKVCCAFLHFYVPMLAVSWMLQEIWEVQNHGATEMNSINRVEKLFDFVVERWFLAVGQFLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSEPEAVSIPSDSLQTYDALHSQQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLIKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGLSEGKSNTKSHLKTTAKKTNLVTDQSNLSSQKTAASHSDGCGSSSPTKSAGTVEVSSAQIQKLKHKHAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPGSQNQTVRNSTGKATMAKSINDKPKSISRSGDSKSAKPRSLN 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23902721 23914004 + ClCG03G011960.2 Cla03g01150 269650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01150 505 MobiDBLite consensus disorder prediction 352 505 - -
Cla03g01150 505 ProSiteProfiles IQ motif profile. 168 196 IPR000048 GO:0005515
Cla03g01150 505 PANTHER IQ-DOMAIN 5-RELATED 62 473 - -
Cla03g01150 505 Gene3D - 166 215 - -
Cla03g01150 505 SMART iq_5 167 189 IPR000048 GO:0005515
Cla03g01150 505 SMART iq_5 190 211 IPR000048 GO:0005515
Cla03g01150 505 ProSiteProfiles IQ motif profile. 192 219 IPR000048 GO:0005515
Cla03g01150 505 PANTHER IQ-DOMAIN 5-RELATED 62 473 - -
Cla03g01150 505 MobiDBLite consensus disorder prediction 411 439 - -
Cla03g01150 505 Pfam IQ calmodulin-binding motif 170 189 IPR000048 GO:0005515
Cla03g01150 505 MobiDBLite consensus disorder prediction 458 487 - -
Cla03g01150 505 MobiDBLite consensus disorder prediction 352 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01150 - - - csv:101204117 765.763
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01150 Cla-Chr3:23902721 Cla09g01991 Cla-Chr9:37477381 6.79E-54 dispersed
Cla03g01150 Cla-Chr3:23902721 Cla05g01841 Cla-Chr5:30295536 1.00E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01991 . 1 479 IQD Protein Family AT3G52290 53.8 1.4e-103 373.6
Cla03g01150 . 73 480 IQD Protein Family AT3G22190 57.8 3.4e-97 352.4
Cla05g01841 . 1 438 IQD Protein Family AT2G26180 61.6 4.0e-119 425.2
Cla07g00945 . 106 281 IQD Protein Family AT2G33990 55.3 3.1e-48 189.1
Cla07g00945 . 109 283 IQD Protein Family AT3G15050 62.4 7.5e-55 211.1
Cla01g00741 . 121 476 IQD Protein Family AT5G13460 50.3 1.6e-73 273.9
Cla06g00255 . 1 509 IQD Protein Family AT4G00820 51.4 7.8e-115 411.4
Cla06g00255 . 1 509 IQD Protein Family AT1G01110 50.1 2.5e-110 396.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01150 Cla_Chr03 FPKM 42.165878 43.068592 54.42107 46.289185 81.556633 83.553612 90.838654 45.462109 47.302185 55.898891