Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01150 ATGGATCAGACGGCTCCTAAGGTATGTTGTGCTTTTCTCCACTTTTATGTTCCTATGTTGGCAGTTAGCTGGATGTTGCAAGAAATCTGGGAAGTCCAGAATCATGGTGCAACTGAAATGAACTCAATTAACCGCGTGGAAAAGTTATTTGATTTTGTAGTCGAAAGGTGGTTTCTAGCTGTTGGTCAGTTCTTAGTCAACACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAAAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGAACCAGAAGCTGTTTCTATTCCTTCTGATTCACTTCAAACTTATGATGCATTGCATAGTCAACAAAATGATATAGAAGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTAGTTAGACTTCAAGCTCTTGTCAGGGGTCACGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTAATAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTCGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGACATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATTATCTGAGGGCAAAAGTAACACTAAATCTCATTTAAAGACTACTGCCAAGAAGACAAACTTAGTAACTGATCAATCAAACCTCTCGAGCCAAAAAACTGCTGCCTCGCATTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGATTCAGAAGCTCAAGCATAAACATGCACCTGAGAGGCCGTTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCACTGGTAAAGCAACCATGGCGAAGTCAATCAACGATAAACCGAAGTCAATTTCCAGATCAGGTGACTCAAAATCTGCAAAACCTAGATCGCTGAATTGA 1518 42.49 MDQTAPKVCCAFLHFYVPMLAVSWMLQEIWEVQNHGATEMNSINRVEKLFDFVVERWFLAVGQFLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSEPEAVSIPSDSLQTYDALHSQQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLIKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGLSEGKSNTKSHLKTTAKKTNLVTDQSNLSSQKTAASHSDGCGSSSPTKSAGTVEVSSAQIQKLKHKHAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPGSQNQTVRNSTGKATMAKSINDKPKSISRSGDSKSAKPRSLN 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23902721 23914004 + ClCG03G011960.2 Cla03g01150 269650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01150 505 MobiDBLite consensus disorder prediction 352 505 - -
Cla03g01150 505 ProSiteProfiles IQ motif profile. 168 196 IPR000048 GO:0005515
Cla03g01150 505 PANTHER IQ-DOMAIN 5-RELATED 62 473 - -
Cla03g01150 505 Gene3D - 166 215 - -
Cla03g01150 505 SMART iq_5 167 189 IPR000048 GO:0005515
Cla03g01150 505 SMART iq_5 190 211 IPR000048 GO:0005515
Cla03g01150 505 ProSiteProfiles IQ motif profile. 192 219 IPR000048 GO:0005515
Cla03g01150 505 PANTHER IQ-DOMAIN 5-RELATED 62 473 - -
Cla03g01150 505 MobiDBLite consensus disorder prediction 411 439 - -
Cla03g01150 505 Pfam IQ calmodulin-binding motif 170 189 IPR000048 GO:0005515
Cla03g01150 505 MobiDBLite consensus disorder prediction 458 487 - -
Cla03g01150 505 MobiDBLite consensus disorder prediction 352 410 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01150 Cla-Chr3:23902721 Cla09g01991 Cla-Chr9:37477381 6.79E-54 dispersed
Cla03g01150 Cla-Chr3:23902721 Cla05g01841 Cla-Chr5:30295536 1.00E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01150 - - csv:101204117 765.763