Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01191 ATGGGGGCTTTCTTTTCGTGTCCTTTGGGCAAATACAATGATGCGAAAAATGGGGAAGAATCTGAATCTATTACTGTGAAATTCATCAATTTTGGCGATGATGAAGTAAAAGATCTAGAGCGATCCGGCAGTTCCAATAGTGGAGATTTGGAGCCTACAATAGTCAAATCGGTGGTTTTGGGGAGAACGGTGTTAGAATCATCTGTTAGGTCCAAAAGTAGAGACTTGGAAAAGATGACTTCAATGGAGACAACAGATATTCCTCTACGGGAGGAAGAGTTGGATGTTGTAGCTAATATTCGAAAGAGCAAAGACATGGAGAATCAATCTCCTAGACCCGAGAGTCATGATGGGATCCAAACAATGATGGATCTCGTTCCAACAAATCTGGAGCACATGGCAGCAACTGAATTACAGAAAGTTTATAAAAGCTTCAGAACCAGGAGAAGGCTGGCCGATTGTGCAGTTCTTGCAGAGAAGAGTTGGTGGAAACTTTTGAATTTTGCTGAGCTCAGGAGGAGCTCCATATCATTTTTTGACATTGAGAAACACGAAACTGCCATTTCGCGGTGGTCTCGAGCAAGAACCAGAGCTGCTAGGGTTGGTAAGGGTTTGTCTAAAAATGACAAAGCTCAAATGCTTGCTTTACAACACTGGCTTGAGGCTATTGATCCACGACATCGTTATGGGCAGAACCTACAGTTTTATTATGATAAATGGCTTCATTGCCAGAGTGAACAACCCTTTTTCTATTGGTTGGATTTAGGAGAAGGGAAGGGAGTAGATCTTGTTGAAGAATGCCCCAGAGTGAAACTTCAACAGCAGTGCATTAAGTATTTGGGCCCATGGGAAAGAACAGCGTATGAAGTTGTTGTGGAGGATGGGAAGTTCATTTACAAGCAATCTGGGGAACTACTTCACACGACCAGAGTCGATAAGCACGAGAAGTGGATATTTGTTCTCAGCACCTCTAAAGCCTTGTATGTTGGAAAGAAAATGAAGGGTAAGTTTCACCATTCGAGTTTCTTGGCTGGAGGAGCCACACTGGCTGCTGGGAGATTGGTTGTTGAAAATGGCATCCTACAGGCAGTTTGGCCTCATAGTGGTCATTACCGTCCCACGGAAGAAAATTTTCATGAATTTATCTCCTTCCTTGCAGAAAACAACGTTGATCTCACTCATGTGAAGATTAGTCCACGTGATGAGGAAGACAATGTACTACAAATGCAGAAGGGCAGTCTTCATGTTCGAAAAGGCTCGTCAGAGGAGGATAGGATTCAACAATTGAGTGGTGGTTCAGATGATGGCGATTCAGAGATTATTGCTGCAGAAACAATTGGGAAATCAGATTTTCCAGAGCAAGAAACATCGTCAATGATCAAAACGTTTGAGCCAAATGGGCCAATCAATTCAAGTACAAATTTAACCAATCTTCACATACCAGATAAGAGTAAACCGATCCCAAAACTCAAGATGGAAAACTTAGAAATGAGATCAGTAACATCTGCTTTGGAGTCGGATTCCGAAGCTCAAAAGAAAAACGTGTTAGAAGAGGAAAATAGAAGTTGCGAGGTAGAGATCATTCCTGATGAATCAATACTGAAAAGAATAACCTCACACAAAGAAACAAAATCATATCAACTGGGAAAGCAACTATCTTGCAAATGGACAACTGGTGCAGGGCCCCGAATAGGGTGTGTTCGTGACTATCCAGCCGATCTGCAGCGCCAAGCATTGGAGCAGGTGAGCTTGTAG 1755 42.62 MGAFFSCPLGKYNDAKNGEESESITVKFINFGDDEVKDLERSGSSNSGDLEPTIVKSVVLGRTVLESSVRSKSRDLEKMTSMETTDIPLREEELDVVANIRKSKDMENQSPRPESHDGIQTMMDLVPTNLEHMAATELQKVYKSFRTRRRLADCAVLAEKSWWKLLNFAELRRSSISFFDIEKHETAISRWSRARTRAARVGKGLSKNDKAQMLALQHWLEAIDPRHRYGQNLQFYYDKWLHCQSEQPFFYWLDLGEGKGVDLVEECPRVKLQQQCIKYLGPWERTAYEVVVEDGKFIYKQSGELLHTTRVDKHEKWIFVLSTSKALYVGKKMKGKFHHSSFLAGGATLAAGRLVVENGILQAVWPHSGHYRPTEENFHEFISFLAENNVDLTHVKISPRDEEDNVLQMQKGSLHVRKGSSEEDRIQQLSGGSDDGDSEIIAAETIGKSDFPEQETSSMIKTFEPNGPINSSTNLTNLHIPDKSKPIPKLKMENLEMRSVTSALESDSEAQKKNVLEEENRSCEVEIIPDESILKRITSHKETKSYQLGKQLSCKWTTGAGPRIGCVRDYPADLQRQALEQVSL 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25191734 25196180 + ClCG03G012380.1 Cla03g01191 269691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01191 584 MobiDBLite consensus disorder prediction 417 438 - -
Cla03g01191 584 MobiDBLite consensus disorder prediction 463 480 - -
Cla03g01191 584 MobiDBLite consensus disorder prediction 463 486 - -
Cla03g01191 584 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM6 1 584 - -
Cla03g01191 584 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 1 584 IPR044159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01191 - - - csv:101218765 925.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01191 Cla-Chr3:25191734 Cla10g01699 Cla-Chr10:32777113 0 dispersed
Cla03g01190 Cla-Chr3:25181168 Cla03g01191 Cla-Chr3:25191734 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g18 . . . Bda09g01381 . Bpe08g01251 . Bma07g01365 Cmo10g00833 . Cma10g00806 . . . Sed12g1673 . Cpe18g00274 Bhi02g01728 Tan09g1013 Cmetu02g1986 . Hepe09g0976 . . . . . . . . . . . . . Lsi06g00384 . . . . . . Bda09g00344 . . . . . . . . . . . . . . . . . . . . Cla03g01191 Cam03g1197 Cec03g1292 Cco03g1261 Clacu03g1274 Cmu03g1848 . . Csa01g03037 Chy02g01317 Cme02g00349
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000861 1 4 1 1 3 3 5 3 3 3 3 3 5 3 3 5 3 2 4 3 3 2 2 3 3 3 2 5 4 1 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01191 Cla_Chr03 FPKM 10.41618 12.429426 13.512043 14.21228 9.65485 10.069567 8.382034 21.550898 22.983448 22.652655