Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01242 ATGTTTCAAGACGAAGGCACATCCTCCATCACTTCCTCCCCTCTCCAGTTCTTCACAATGATGTCTCTTTCCCCTAAATTGGGTTCTCCATATCCATGGCTTAGAGAGCTTAAATCTGAGGAGAGGGGCTTGTATCTAATCCATTTGTTGCTTACTTGTGCAAATCATGTGGCTGTTGGTAGCCTTGACAGTGCTAATCTTGCCCTTGATCAAATATCTCATCTTGCTTCTGCAGATGGTGATACAATGCAGCGAATTGCAGCATATTTCGCCGAGGCTCTGGCGGATAGGATCCTCAAGACTTGGCCTGGTCTTTACAAGGCATTCAACTCTACTAAGATACCAATGGTTTCAGAGAAGATTCTTGTTAAGAAACTGTTCTTTGAAATGTTTCCATTCCTCAAGGTGGCTTTTGTGCTTACTAATCAAGCTATTGTTGAAGCCATGGAGGGAGAAAAGATGATTCATATAATTGATCTCAATGCTAATGAAACTGCTCAGTGGCTTGCTCTTTTGCAAGTTTTGAGTGTGAGGCCTGAAGGACCTCCACATTTGAGAATCACTGGAGTTCATCCACAGAAAGAGGTTCTGGATCAAATGGCTCGTAGGCTGACCGATGAAGCCGAGAAATTGGACATCCCGTTTCAATTCAATTCGGTTATCAGCCGACTAGACGATCTTGATATGGAAAAGCTTCGTGTGAAAACTGGGGAGGCTTTGGCCATCAATTCAGTTCTTCAGTTGCACACCCTTTTGGGCTGTGATAATGAAGTCTTGCAAAAGCCATCTCCATCAGCAGCCAAGAGTGCAAATGGAGTTCAATACTCGAGATACCCACATCTGAACCAAACCACCTTGAGTGACTTACTCGACAAGGATTTGGTTAACGGATGTAGTCCAAGTCCCGATTCAGTTTCCTCATCAGCATTATCTCAGGCTAATGTGACGAAGATCGACAGCTTTTTGAATGGATTGTGGAGTTTGACGCCAAAGGTGATGGTCGTAACAGAACAAGATTCTAACCATAATGGTTCAACACTTATGGAGAGATTACTGGAGGCTCTCCACACATATGCAGCTATCTTTGATTGTTTGGAGTCTAACATGTCAAGAACATCCCTGGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGAGAAGAGATTAAGAACATCATAGCTTGTGAGGGAGCTGAAAGGAAGGAACGACATGAAAAACAAGAGAAATGGAGTCAACGGTTCGATGTTGCGGGGTTCAGGCATGTGTCTTTGAGTTATTATGGCATGATGCAGGCTCGGAGCTTGCTGCAGGGGTATGGTTGTGATGGTTATAGGATGAAGGAAGAGAATGGCTGTGTGATGATTTGTTGGCAAGATCGTCCATTGTTCTCGGTTTCGGCTTGGAGATGTTGTAAGTAG 1416 43.86 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDSANLALDQISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPMVSEKILVKKLFFEMFPFLKVAFVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHPQKEVLDQMARRLTDEAEKLDIPFQFNSVISRLDDLDMEKLRVKTGEALAINSVLQLHTLLGCDNEVLQKPSPSAAKSANGVQYSRYPHLNQTTLSDLLDKDLVNGCSPSPDSVSSSALSQANVTKIDSFLNGLWSLTPKVMVVTEQDSNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGAERKERHEKQEKWSQRFDVAGFRHVSLSYYGMMQARSLLQGYGCDGYRMKEENGCVMICWQDRPLFSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26710493 26711908 + ClCG03G012930.1 Cla03g01242 269742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01242 471 Pfam GRAS domain family 46 468 IPR005202 -
Cla03g01242 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
Cla03g01242 471 PANTHER SCARECROW-LIKE PROTEIN 3 2 470 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cla03g01242 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 470 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01242 Cla-Chr3:26710493 Cla05g02124 Cla-Chr5:32826850 0 dispersed
Cla03g01242 Cla-Chr3:26710493 Cla07g00872 Cla-Chr7:24281159 4.64E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60834 PF03514 GRAS 5.30E-142 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01242 - - csv:101215435 882.093