Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01271 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCCTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCGAAAGAAGCGCAAGCCACTGGATCTCCACATTCTGTGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTGGGATGCAGTCTACACATCTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGGCTATCCTATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGGTGGATTTTCCATACCTTCATGAGTCTAGACATCAGCATGCCATAAGAAGGTCAAGGAGTAGTGGAGGACGTTTTGCTAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGACAAACAAGGCCTCAGAATAG 819 45.18 MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSPEFPNGGSESNDGQSVSNNDVNDEEDDVSKEAQATGSPHSVGSYRQDAQKMQHVSSTLPAMHGECGMQSTHLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKVDFPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKVNESGYRLNDGSEQQNGSSLTNKASE 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27180956 27186016 - ClCG03G013220.1 Cla03g01271 269771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01271 272 MobiDBLite consensus disorder prediction 37 98 - -
Cla03g01271 272 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 33 264 IPR001289 GO:0003700|GO:0006355
Cla03g01271 272 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 231 IPR001289 GO:0003700|GO:0006355
Cla03g01271 272 SMART cbf3 170 234 IPR001289 GO:0003700|GO:0006355
Cla03g01271 272 MobiDBLite consensus disorder prediction 229 252 - -
Cla03g01271 272 MobiDBLite consensus disorder prediction 39 67 - -
Cla03g01271 272 Gene3D - 171 236 - -
Cla03g01271 272 MobiDBLite consensus disorder prediction 82 98 - -
Cla03g01271 272 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Cla03g01271 272 MobiDBLite consensus disorder prediction 213 272 - -
Cla03g01271 272 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Cla03g01271 272 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Cla03g01271 272 MobiDBLite consensus disorder prediction 1 22 - -
Cla03g01271 272 ProSiteProfiles NF-YA/HAP2 family profile. 171 234 IPR001289 GO:0003700|GO:0006355
Cla03g01271 272 MobiDBLite consensus disorder prediction 1 17 - -
Cla03g01271 272 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 33 264 - -
Cla03g01271 272 MobiDBLite consensus disorder prediction 253 272 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g02245 Cla03g01271 CCT
Cla02g02245 Cla03g01271 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01271 Cla-Chr3:27180956 Cla09g00377 Cla-Chr9:3676310 7.68E-41 dispersed
Cla02g02245 Cla-Chr2:37564957 Cla03g01271 Cla-Chr3:27180956 2.60E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60836 PF02045 CBFB_NFYA 2.50E-23 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01271 K08064 - csv:101212860 491.115