Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g01271 | ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCCTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCGAAAGAAGCGCAAGCCACTGGATCTCCACATTCTGTGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTGGGATGCAGTCTACACATCTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGGCTATCCTATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGGTGGATTTTCCATACCTTCATGAGTCTAGACATCAGCATGCCATAAGAAGGTCAAGGAGTAGTGGAGGACGTTTTGCTAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGACAAACAAGGCCTCAGAATAG | 819 | 45.18 | MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSPEFPNGGSESNDGQSVSNNDVNDEEDDVSKEAQATGSPHSVGSYRQDAQKMQHVSSTLPAMHGECGMQSTHLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKVDFPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKVNESGYRLNDGSEQQNGSSLTNKASE | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 27180956 | 27186016 | - | ClCG03G013220.1 | Cla03g01271 | 269771 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g01271 | 272 | MobiDBLite | consensus disorder prediction | 37 | 98 | - | - | |
Cla03g01271 | 272 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 33 | 264 | IPR001289 | GO:0003700|GO:0006355 | |
Cla03g01271 | 272 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 174 | 231 | IPR001289 | GO:0003700|GO:0006355 | |
Cla03g01271 | 272 | SMART | cbf3 | 170 | 234 | IPR001289 | GO:0003700|GO:0006355 | |
Cla03g01271 | 272 | MobiDBLite | consensus disorder prediction | 229 | 252 | - | - | |
Cla03g01271 | 272 | MobiDBLite | consensus disorder prediction | 39 | 67 | - | - | |
Cla03g01271 | 272 | Gene3D | - | 171 | 236 | - | - | |
Cla03g01271 | 272 | MobiDBLite | consensus disorder prediction | 82 | 98 | - | - | |
Cla03g01271 | 272 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 176 | 196 | IPR018362 | GO:0003677|GO:0016602 | |
Cla03g01271 | 272 | MobiDBLite | consensus disorder prediction | 213 | 272 | - | - | |
Cla03g01271 | 272 | PRINTS | CCAAT-binding transcription factor subunit B signature | 208 | 231 | IPR001289 | GO:0003700|GO:0006355 | |
Cla03g01271 | 272 | PRINTS | CCAAT-binding transcription factor subunit B signature | 174 | 196 | IPR001289 | GO:0003700|GO:0006355 | |
Cla03g01271 | 272 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cla03g01271 | 272 | ProSiteProfiles | NF-YA/HAP2 family profile. | 171 | 234 | IPR001289 | GO:0003700|GO:0006355 | |
Cla03g01271 | 272 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cla03g01271 | 272 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 33 | 264 | - | - | |
Cla03g01271 | 272 | MobiDBLite | consensus disorder prediction | 253 | 272 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla02g02245 | Cla03g01271 | CCT | |
Cla02g02245 | Cla03g01271 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g01271 | Cla-Chr3:27180956 | Cla09g00377 | Cla-Chr9:3676310 | 7.68E-41 | dispersed | |
Cla02g02245 | Cla-Chr2:37564957 | Cla03g01271 | Cla-Chr3:27180956 | 2.60E-98 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60836 | PF02045 | CBFB_NFYA | 2.50E-23 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g01271 | K08064 | - | csv:101212860 | 491.115 |