Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01298 ATGGTGAACCCACCACTTCCCCTCCAGCAAATATCCCCAAAAATGGCTGCCACGAACACCAATGTCGCCGGCGACGTCGACGATCGCGTCTTGGCCACCGCTCAGCAGATCGTCAAAAGCTTCAATACTCCTAAAGAGGTCCGTGAGGATATGCTCTTGATTCTCTCTAGTTTTGATAATCGTCTTTCCAGTATTAGTAGTATGATCAATAGTGATGACTCCAAGACTAAGAACGATAGGTTGGACGCCGCCGAGAAGGTGATTCTACGTTGGGACACAAATTCCGATGTGTCGATTCGGTCGTTTAATTGGGAGGATTCGCGGGACGAGGCGGCTGAATATTTTTCGGCGGTGGATGATATACTCCAGTTAATGGAAGAGCTTTCAATTGGGTCTGAATCGACCGACATCGTAGACCGAGCAGAAAACGTGATCCAAATGGCGATGTGTCGGCTCGAGAGCGAATTTCGCCATATCTTGATCCAGAGCACAGTCCCTCTCGACGCCGAGCGGCTTTACGGCTCGATCCGAAGAGTTCACCTCACGTTTGCGTCACATTACAGTGAAATTGACGACGAATTCGAGAGTTTCACCGAGGAAAGTTGCAGTTCCGGGCGATTTCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTTGATTTGATCCATCCTGATGCGGCTGTTGATCTTTCAGAGATTGCGGACCGTATGATTCGCTCTGGCTATGAAAAGGAGTGTGTTCAAGTCTATAGCACTGTTCGTCGTGATGCTTTGGACGAGTGCTTGGCGATTCTTGGCGTCGAACGACTCAGCATTGAGGAGGTTCAGAAAAGTGATTGGAAATTCTTGGATGAGAAGATGAAGAAATGGATTCAGGCAGTCAAAATTACAGTTCGGTTGATTTTGGAAGGTGAGAAGAGGCTCTGTGATCAGATTTTCAATGGCGCTAATGAATCCAAGGAGATTTGTTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTATTGAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGATCACCTGAGAAGCTGTTCCGAATCTTGGATATGTACGACGCTTTGGCTGGGGTTTTGCCCAACTTAGAAGCCATGGTTTCTGATGGATTTTTGATCAGTGAAGCACATGGAGTATTGTCGGGACTAGGAGAAGCAGCCACAGGGACATTTGCCGAGTTTGAGAATGCCATTAAAAGCGAAAATTCAAAGAAAGCAATGCAAAACGCCGAGATTCACCCGCTTATTCGATATGTAATGAATTATGTTAGATTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGACGAGGAAGTGCAAGACTTGCCAAATGAGAGGGATAATGACGATAATCTGCAGTTGGAAAGTACATCACCTTTAGCTCGTAGATTATTAACGCTGTTATCGTCTTTGGAGTCCAATCTTATGGAAAAATCCAAGTTGTATGAGGATGTTGCTATGCAGTTTATATTTCTAATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAGCTGCTTGGTGATAACTGGCTTCGTAGGCATAGTGGCCAAATTCGCCAATATGAAACGAGTTACCTTAGAGCTTCTTGGAGCAAAGTTTTGTCTTGCTTAAAGGATGAAGGTATTGGTGGGAGCACAAGCAATGCCTCCAAGGTAGCTTTGAAGGAAAAGTTCAAGAATTTCAATGCAGGTTTTGAGGAAATCTGCAGGGTTCAAACAGCTTGGAAGGTATCAGATGCTCAACTACGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATTCCAGCGTATCGCTCCTTCTTAGGAAGGTTTAGAAATCAGTTAGAGAGTGGAAGGAATTCCGGGAAGTACATAAAGTACACGCCAGAGGATTTAGAGAACTCTCTATCAGATTTGTTTGAAGGATCAGCTGCTGTATTACATCACTTGCGAAGAAAGGGTACTTGA 1998 44.64 MVNPPLPLQQISPKMAATNTNVAGDVDDRVLATAQQIVKSFNTPKEVREDMLLILSSFDNRLSSISSMINSDDSKTKNDRLDAAEKVILRWDTNSDVSIRSFNWEDSRDEAAEYFSAVDDILQLMEELSIGSESTDIVDRAENVIQMAMCRLESEFRHILIQSTVPLDAERLYGSIRRVHLTFASHYSEIDDEFESFTEESCSSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILEGEKRLCDQIFNGANESKEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPNLEAMVSDGFLISEAHGVLSGLGEAATGTFAEFENAIKSENSKKAMQNAEIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEVQDLPNERDNDDNLQLESTSPLARRLLTLLSSLESNLMEKSKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRHSGQIRQYETSYLRASWSKVLSCLKDEGIGGSTSNASKVALKEKFKNFNAGFEEICRVQTAWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRNSGKYIKYTPEDLENSLSDLFEGSAAVLHHLRRKGT 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27749758 27751755 - ClCG03G013510.1 Cla03g01298 269798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01298 665 PANTHER EXOCYST COMPLEX PROTEIN EXO70 63 664 IPR004140 GO:0000145|GO:0006887
Cla03g01298 665 Pfam Exo70 exocyst complex subunit 289 648 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cla03g01298 665 Gene3D Exocyst complex component Exo70 87 657 - -
Cla03g01298 665 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 63 664 - -
Cla03g01298 665 SUPERFAMILY Cullin repeat-like 79 651 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00352 Cla-Chr3:4086848 Cla03g01298 Cla-Chr3:27749758 0 dispersed
Cla03g01298 Cla-Chr3:27749758 Cla07g01553 Cla-Chr7:32714972 1.52E-145 dispersed
Cla03g01298 Cla-Chr3:27749758 Cla07g01376 Cla-Chr7:30912560 1.43E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01298 K07195 - csv:101205970 1119.76