Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01321 ATGGAAGACGAAGCCTCCTCCAGTTTCCTTTCCCATATCAAGACTCCTATTCTAACAGACGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCTAAGCGGCCGAGATTGGACAACGATCTTAATGATGTTGTCGCCGTCGGGAAATTCAAAGGCGTTGTTCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTACGCGAATCACCAGAGGATCTGGCTCGGTACCTTCAAAACAGAGAAAGACGCTGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGCACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGAACAATCGAGGAGCCAAATTTTCAAATCAAATTCTCCACAGACGCCGTTCTGAGTATGATCAAAGACGGGTCATATTACTCGAAATTTTCCGCTTATTTACGAACGCGATCGCAAATTCACGACTCGAATTTACAGAATCCTCAAAATTTCGACAATACCGATGGCGATAGCCTTTTCTCTTGCAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGCAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCATACATCAGCGAAAGCGCAGAGGAGAACGGCGATGACATTGAAATCGTCTTCTACGATACGTCGATGAAGACGTGGAAGTTCCGATATTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTTACCAGAGGCTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCAAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGACGAAAATGGCGGAACATTGAACTTCATAGACGTAATCTATAAGAAATCGGAGGATGATCAGAGCGACAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGCAAATATTGGAGAGCGAATTAGGGCAAAATCAGGGGAAGGGTTGTGAGAAGGAGAAGAACAAGAAGAAGAAGGAGATTTTAAGCATTGAATTGAACCCTAATGATAAAAATGTTGGGGGAAAGCGTATTAGGCTATTTGGAGGTGTTGTTACACCAGCTCTTGGTGGAAATTTAAAGGCAATGCCATGGGCTAAACTTAAGAGTGTTTACAATGTATCCTCTCTGAAATACTTTCACCTGAATTCCGCCACTTCATCTTCTACAAAATTTGAGAAGATTGCAACTAAAGCTATGTCGGGATCTAGTGAAAACACACCAATCTCCGGGTTGCCGGTTGATTTAAAAGGTAAGCGGGCATTTATTGCTGGTGTAGCTGATGATAATGGTTATGGTTGGGCAATAGCAAAATCTCTTGCTGCTGCCGGGGCTGAAATTATTGTTGGTACGTGGGTCCCGGCTTTAAACATCTTTGAATCCAGCTTGCGACGTGGAAAGTTTGACGAATCTCGAGCGTTGCCAAATGGATCTTTAATGGAGATCGCCAAAATATATCCCTTGGATGCAGTTTTTGACAATCCTGAGGATGTTCCTGAAGATGTAGGCCAGACATTGCCTGTTATAAAAACTAATAAGCGATATGCGGGTTCCACTAATTGGACAGTTCAGGTAAGTAAACCTCTCTTAGAGACATCCAGGAAAGGTTACCTAGCGGCTTTATCTGCATCAAGTTACTCCTACATTTCTCTTCTTAACATTTCGTTCCAATAA 1695 43.89 MEDEASSSFLSHIKTPILTDEVSDSNFTYYAIPEAKRPRLDNDLNDVVAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDSNLQNPQNFDNTDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKSEDDQSDSSCLAAEKESVKNEQILESELGQNQGKGCEKEKNKKKKEILSIELNPNDKNVGGKRIRLFGGVVTPALGGNLKAMPWAKLKSVYNVSSLKYFHLNSATSSSTKFEKIATKAMSGSSENTPISGLPVDLKGKRAFIAGVADDNGYGWAIAKSLAAAGAEIIVGTWVPALNIFESSLRRGKFDESRALPNGSLMEIAKIYPLDAVFDNPEDVPEDVGQTLPVIKTNKRYAGSTNWTVQVSKPLLETSRKGYLAALSASSYSYISLLNISFQ 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28238405 28247132 - ClCG03G013700.1 Cla03g01321 269821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01321 564 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Cla03g01321 564 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Cla03g01321 564 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Cla03g01321 564 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 357 IPR044800 GO:0003700
Cla03g01321 564 CDD B3_DNA 174 281 IPR003340 GO:0003677
Cla03g01321 564 Gene3D - 164 295 IPR015300 -
Cla03g01321 564 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 14 357 - -
Cla03g01321 564 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Cla03g01321 564 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677
Cla03g01321 564 Gene3D - 421 549 - -
Cla03g01321 564 SMART B3_2 176 285 IPR003340 GO:0003677
Cla03g01321 564 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677
Cla03g01321 564 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 424 557 IPR036291 -
Cla03g01321 564 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Cla03g01321 564 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700|GO:0006355
Cla03g01321 564 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g02293 Cla03g01321 CCT
Cla02g02293 Cla03g01321 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01321 Cla-Chr3:28238405 Cla06g01223 Cla-Chr6:25468459 2.91E-103 dispersed
Cla03g01321 Cla-Chr3:28238405 Cla07g00776 Cla-Chr7:21656637 9.33E-26 transposed
Cla03g01321 Cla-Chr3:28238405 Cla01g00124 Cla-Chr1:1170541 7.03E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60840 PF02362 B3 1.50E-26 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01321 K09287 - csv:101219913 641.728