Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01335 AGAATGACACGAGGCGAGGAGTTGTGGGAGCGCTTAGTTCAAGCAGCCTTAAGAAGGGATAGAATTGGCATTGATGCTTATGGACCAAACATTATGGAAATTGATGAAATCTTGATAGCTGCAGATGAAATCCAAGATGAAGATCCCAATATCTCGAGAATCTTATGTGAGCATGCATATTCACTTGCGCAAAACCTGGATCCTAATAGTGAAGGAAGAGGTGTTTTGCAATCCAAAACTGGTTTGATGACTGTCATTAAGCAAACGCTAGCCAAGAGGGAGGGTGGAACCATAGATAGAAGCCATGACATTACTCGGTTACAGGAGTTCTACAAACTATACCAAGAGAAAAATAGTGTAGATAAGCTTTGGGAAGGTGAAATGAAATTGAGGGAATCTGGTGCTTTCAGTGGTAATCTTGGAGAGTTGGAATGGAAAACATTGAAGCGAAAAAAAGGCTTTGCAACCCTGAAAGTATTGGCCATGGTACTGAAGCAACTCAGTGATGCAATTCCTGAAGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCTGCAGAATTTTCTATTCCGGAGACTAAGAGTCCTGATATACTTGACTTTCTACACTTCGTTTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTTGAAGAAACTGAATCAGTAAGTGCTGTATTCTCATCTACATTGATGGATGATTTAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTATGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTTATTTCCTTGTACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTCCCAGAATGCTTATGCTACATATTTCACCATATTCTCAACTCTCAGAAGATCATTTTGAGGAAGCTTTGGTTGGTCTTTTTCAAGGATCGGCTGAGAAGTCAGGGTTTCAAAGCAAGCAAAAATGAATACCATTTTTCATGTCCACACCTGCTTCCTAGAAGATTTTTATCTATTTGTAGTTTTGTAATGTTTATCTTTTCCCATGAGCTTCATTGTCTTATCCTTGCACCTTAA 1197 39.6 RMTRGEELWERLVQAALRRDRIGIDAYGPNIMEIDEILIAADEIQDEDPNISRILCEHAYSLAQNLDPNSEGRGVLQSKTGLMTVIKQTLAKREGGTIDRSHDITRLQEFYKLYQEKNSVDKLWEGEMKLRESGAFSGNLGELEWKTLKRKKGFATLKVLAMVLKQLSDAIPEEVQAAVSALKYFSGLPKLPAEFSIPETKSPDILDFLHFVFGFQKDNVSNQREHVVHLLANEQSRLRILEETESVSAVFSSTLMDDLKLDAAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHILNSQKIILRKLWLVFFKDRLRSQGFKASKNEYHFSCPHLLPRRFLSICSFVMFIFSHELHCLILAP 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28576385 28601538 + ClCG03G013910.1 Cla03g01335 269835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01335 398 SMART FKS1_dom1_2 299 375 IPR026899 -
Cla03g01335 398 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 172 332 - -
Cla03g01335 398 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 301 336 IPR026899 -
Cla03g01335 398 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 2 149 - -
Cla03g01335 398 PANTHER CALLOSE SYNTHASE 9 2 149 - -
Cla03g01335 398 PANTHER CALLOSE SYNTHASE 9 172 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01331 Cla-Chr3:28444839 Cla03g01335 Cla-Chr3:28576385 1.31E-09 dispersed
Cla03g01335 Cla-Chr3:28576385 Cla03g01330 Cla-Chr3:28360532 0 dispersed
Cla03g01332 Cla-Chr3:28452952 Cla03g01335 Cla-Chr3:28576385 1.22E-155 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01335 K11000 - csv:101216435 513.842