Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01335 AGAATGACACGAGGCGAGGAGTTGTGGGAGCGCTTAGTTCAAGCAGCCTTAAGAAGGGATAGAATTGGCATTGATGCTTATGGACCAAACATTATGGAAATTGATGAAATCTTGATAGCTGCAGATGAAATCCAAGATGAAGATCCCAATATCTCGAGAATCTTATGTGAGCATGCATATTCACTTGCGCAAAACCTGGATCCTAATAGTGAAGGAAGAGGTGTTTTGCAATCCAAAACTGGTTTGATGACTGTCATTAAGCAAACGCTAGCCAAGAGGGAGGGTGGAACCATAGATAGAAGCCATGACATTACTCGGTTACAGGAGTTCTACAAACTATACCAAGAGAAAAATAGTGTAGATAAGCTTTGGGAAGGTGAAATGAAATTGAGGGAATCTGGTGCTTTCAGTGGTAATCTTGGAGAGTTGGAATGGAAAACATTGAAGCGAAAAAAAGGCTTTGCAACCCTGAAAGTATTGGCCATGGTACTGAAGCAACTCAGTGATGCAATTCCTGAAGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCTGCAGAATTTTCTATTCCGGAGACTAAGAGTCCTGATATACTTGACTTTCTACACTTCGTTTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTTGAAGAAACTGAATCAGTAAGTGCTGTATTCTCATCTACATTGATGGATGATTTAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTATGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTTATTTCCTTGTACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTCCCAGAATGCTTATGCTACATATTTCACCATATTCTCAACTCTCAGAAGATCATTTTGAGGAAGCTTTGGTTGGTCTTTTTCAAGGATCGGCTGAGAAGTCAGGGTTTCAAAGCAAGCAAAAATGAATACCATTTTTCATGTCCACACCTGCTTCCTAGAAGATTTTTATCTATTTGTAGTTTTGTAATGTTTATCTTTTCCCATGAGCTTCATTGTCTTATCCTTGCACCTTAA 1197 39.6 RMTRGEELWERLVQAALRRDRIGIDAYGPNIMEIDEILIAADEIQDEDPNISRILCEHAYSLAQNLDPNSEGRGVLQSKTGLMTVIKQTLAKREGGTIDRSHDITRLQEFYKLYQEKNSVDKLWEGEMKLRESGAFSGNLGELEWKTLKRKKGFATLKVLAMVLKQLSDAIPEEVQAAVSALKYFSGLPKLPAEFSIPETKSPDILDFLHFVFGFQKDNVSNQREHVVHLLANEQSRLRILEETESVSAVFSSTLMDDLKLDAAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHILNSQKIILRKLWLVFFKDRLRSQGFKASKNEYHFSCPHLLPRRFLSICSFVMFIFSHELHCLILAP 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28576385 28601538 + ClCG03G013910.1 Cla03g01335 269835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01335 398 SMART FKS1_dom1_2 299 375 IPR026899 -
Cla03g01335 398 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 172 332 - -
Cla03g01335 398 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 301 336 IPR026899 -
Cla03g01335 398 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 2 149 - -
Cla03g01335 398 PANTHER CALLOSE SYNTHASE 9 2 149 - -
Cla03g01335 398 PANTHER CALLOSE SYNTHASE 9 172 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01335 K11000 CALS; callose synthase [EC:2.4.1.-] - csv:101216435 513.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01331 Cla-Chr3:28444839 Cla03g01335 Cla-Chr3:28576385 1.31E-09 dispersed
Cla03g01335 Cla-Chr3:28576385 Cla03g01330 Cla-Chr3:28360532 0 dispersed
Cla03g01332 Cla-Chr3:28452952 Cla03g01335 Cla-Chr3:28576385 1.22E-155 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g01099 . 1 1057 Cell Wall Biosynthesis AT5G17420 81.1 0.0e+00 1767.3
Cla04g00344 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1431.4
Cla01g01542 . 1 1117 Cell Wall Biosynthesis AT5G17420 63.1 0.0e+00 1427.9
Cla09g00379 . 9 1082 Cell Wall Biosynthesis AT5G17420 66.6 0.0e+00 1427.9
Cla05g01748 . 1 1119 Cell Wall Biosynthesis AT5G17420 63.5 0.0e+00 1418.3
Cla08g00212 . 1 1105 Cell Wall Biosynthesis AT5G17420 62.0 0.0e+00 1404.4
Cla06g00135 . 986 2023 Cell Wall Biosynthesis AT5G17420 65.4 0.0e+00 1394.0
Cla03g00703 . 515 1490 Cell Wall Biosynthesis AT5G17420 61.5 0.0e+00 1270.4
Cla03g01330 . 1 1822 Cell Wall Biosynthesis AT3G07160 74.0 0.0e+00 2780.7
Cla03g01332 . 10 1826 Cell Wall Biosynthesis AT3G07160 72.9 0.0e+00 2652.9
Cla06g01725 . 1 2000 Cell Wall Biosynthesis AT3G07160 52.7 0.0e+00 2029.2
Cla03g01337 . 39 794 Cell Wall Biosynthesis AT3G07160 72.6 0.0e+00 1159.1
Cla03g01336 . 3 713 Cell Wall Biosynthesis AT3G07160 62.4 1.1e-251 867.8
Cla03g01335 . 2 342 Cell Wall Biosynthesis AT3G07160 61.6 2.6e-120 431.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014227 0 0 1 0 0 2 1 2 3 0 2 2 0 0 0 1 2 1 0 1 0 0 0 1 3 0 0 0 0 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01335 Cla_Chr03 FPKM 9.350617 10.763099 7.170897 5.858597 6.2082 3.335666 4.203807 7.663622 3.97362 5.541153