Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01336 ATGCAGATGGTTCAGGAAATGGATGAAGTATTGAGGCATCGGATTGCGCAGCCAGCCAAGAGCTGTGAGTCTAAATATGGTGTTTCTTTCCTTGATCAAGAAGCTGCAAACAATAATAATGGGCAGGCACCATATTCTGCATGGAGAAACTATGATGATTTTAACGAGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACACCAAAATCAAAGAGTATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGTACTTTTCTTCGTCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGGTTATGACATTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAACTTTAATATGAAGACATGGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATATTCTACTTCAAGGCGTATTTTTGTTTCTCGAATTCTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTTGATAACATTTCTTTATGTGGAAGCTCTTCAGGAAAGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCCCAGTATCCTCATGCATATACCTGCTTGCCGTCTTTTAATGAATCAATGTGATTTGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGGTACTATGTTGGAAGTGGGATGTATGAGAGGACTACTGACTTTATTAAATACATGCTTCTGTGGATTATCATTCTTGGTGGAAAACTTGCACTTGCTTATTTTCTTCAGATCAAGCCTCTTGTTGGACCTACAAGGCTTATTGTAAATAGGAGAGATATAAGATATTCGTGGCATGACTTTGTGTCTAAAGATAATCATAATGCATTGACTATTCTTAGCTTGTGGGCCCCCGTGATTTACATCTTGGACATCCATGTTTTCTATACTATTATATCGGCCATATGGAGTTTCTTAATTGGGGCAAGAGACCGTCTTGGAGAGATTAGATCATTAGAAGCCATACATAAACTGTTTAATCGGTTTCCTGGAGCTTTTATGGACACTCTACATGTTCCTCTCCAAGACAGGCTTGGTCTTTCAGAATGCTCCTTTGCACTTTGTTTCGGTGGTAGTCCTTTGGGTTGTAGCTACACTCTCCAAGATTTAACTCTTTTTAAAGATCTTCAAAGGTTGTTGGTTCATGTTGTTGAGAAAGACAAGTTTGATGCTGCTCGATTTTCTCCCTTCTGGAATGAAATCATAGCAAGTTTACGGGAAGAAGATTATATTACAAACTTGGAAATGGAGTTACTTCAAATGCCTAAAAACAATGGTAATCTTCCCATGGTTCAGTGGCCACTTTTTCTTCTTGTCAGCAAGATATCTCTAGCTAAGGATATTGCTGTTAAAAGACGAGATTCGCAAGACAAGCTGTGGAAGCATATTTCCAGAGATGACTATATGAAATATGCAGTACACGAATGTTACCACGCCATTAAGCTTATCTTAATGGAATTACTAGTTGGGGAAGGAAGGATGGTTGAAAGGGTATTTGAAGACACTGAAGCTAGTTTAGCAAACAATTCCATTCTAAATGACTTCCAGCTAAATAAGTTGCCACTTGTGATTACAAGAGTAACTGCTCTGATGGGTATTTTGAAAGAGCCAGAAACTTCGGAGCTGGAAAAAGAGGCTATTAAGGCTGTTCAAGATTTGTATGATGTTGTGCACCATGATCTCCTTTCCAGTGACAAGAGGGGGCACTATGAAACATGGAACATATTAGTAAAAGCCAGAAATGAAGGTCGTTTGTTTACAAAGTTAAATTGGCCCAAAGATTTAGAATTGAAGTCACAAGTCAAAAGATTGTATTCCTTGTTAACCATTAAAAAGACAACTTTAGATATTCCATTTAACTTTGAGGCCCAACGGAGACTGCAATTCTTTACAAATTCACTTTTCATGGTGATGCCAACTCCAAAACTTGTTCGTCAGATGCTTTCCTTCAGTGTATTCACTCCGTATTATTCTGAGACG 2142 38.47 MQMVQEMDEVLRHRIAQPAKSCESKYGVSFLDQEAANNNNGQAPYSAWRNYDDFNESLRCFDLSWPWHKGKSFFQKPTPKSKSMLGRSRHQGKTSFVEHRTFLRLYHSFHRLWIFLVMTFQALTIVAFNNGNFNMKTWLEVLSLGPTFVVMKFIESVLDILMMYGAYSTSRRIFVSRILLRFLWFSIASALITFLYVEALQERSKPNAERVMFRLYVIVIGIYGGVQLCPSILMHIPACRLLMNQCDLWPLVRFFKWMRQERYYVGSGMYERTTDFIKYMLLWIIILGGKLALAYFLQIKPLVGPTRLIVNRRDIRYSWHDFVSKDNHNALTILSLWAPVIYILDIHVFYTIISAIWSFLIGARDRLGEIRSLEAIHKLFNRFPGAFMDTLHVPLQDRLGLSECSFALCFGGSPLGCSYTLQDLTLFKDLQRLLVHVVEKDKFDAARFSPFWNEIIASLREEDYITNLEMELLQMPKNNGNLPMVQWPLFLLVSKISLAKDIAVKRRDSQDKLWKHISRDDYMKYAVHECYHAIKLILMELLVGEGRMVERVFEDTEASLANNSILNDFQLNKLPLVITRVTALMGILKEPETSELEKEAIKAVQDLYDVVHHDLLSSDKRGHYETWNILVKARNEGRLFTKLNWPKDLELKSQVKRLYSLLTIKKTTLDIPFNFEAQRRLQFFTNSLFMVMPTPKLVRQMLSFSVFTPYYSET 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28601545 28629520 + ClCG03G013920.1 Cla03g01336 269836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01336 714 SMART FKS1_dom1_2 2 68 IPR026899 -
Cla03g01336 714 Pfam 1,3-beta-glucan synthase component 672 713 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Cla03g01336 714 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 436 713 - -
Cla03g01336 714 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 2 400 - -
Cla03g01336 714 PANTHER BNAC03G35120D PROTEIN 436 713 - -
Cla03g01336 714 PANTHER BNAC03G35120D PROTEIN 2 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01336 K11000 CALS; callose synthase [EC:2.4.1.-] - csv:101216435 1152.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01336 Cla-Chr3:28601545 Cla03g01330 Cla-Chr3:28360532 0 dispersed
Cla03g01332 Cla-Chr3:28452952 Cla03g01336 Cla-Chr3:28601545 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g115 . . . . . . Bma14g00713 . Cmo10g01015 Cmo11g00826 . . . . . . . Bhi02g01627 Tan09g0908 . . Hepe09g1050 . . . . . . . . . . . . . Lsi06g00460 . . . . . . . . . . . . . . Cma11g00821 . . . . Cpe04g00948 . . . . . . . Cla03g01336 Cam03g1419 Cec03g1452 Cco03g1444 Clacu03g1439 Cmu03g1995 Cre03g1670 . . Chy02g01392 Cme02g00458
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g01099 . 1 1057 Cell Wall Biosynthesis AT5G17420 81.1 0.0e+00 1767.3
Cla04g00344 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1431.4
Cla01g01542 . 1 1117 Cell Wall Biosynthesis AT5G17420 63.1 0.0e+00 1427.9
Cla09g00379 . 9 1082 Cell Wall Biosynthesis AT5G17420 66.6 0.0e+00 1427.9
Cla05g01748 . 1 1119 Cell Wall Biosynthesis AT5G17420 63.5 0.0e+00 1418.3
Cla08g00212 . 1 1105 Cell Wall Biosynthesis AT5G17420 62.0 0.0e+00 1404.4
Cla06g00135 . 986 2023 Cell Wall Biosynthesis AT5G17420 65.4 0.0e+00 1394.0
Cla03g00703 . 515 1490 Cell Wall Biosynthesis AT5G17420 61.5 0.0e+00 1270.4
Cla03g01330 . 1 1822 Cell Wall Biosynthesis AT3G07160 74.0 0.0e+00 2780.7
Cla03g01332 . 10 1826 Cell Wall Biosynthesis AT3G07160 72.9 0.0e+00 2652.9
Cla06g01725 . 1 2000 Cell Wall Biosynthesis AT3G07160 52.7 0.0e+00 2029.2
Cla03g01337 . 39 794 Cell Wall Biosynthesis AT3G07160 72.6 0.0e+00 1159.1
Cla03g01336 . 3 713 Cell Wall Biosynthesis AT3G07160 62.4 1.1e-251 867.8
Cla03g01335 . 2 342 Cell Wall Biosynthesis AT3G07160 61.6 2.6e-120 431.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01336 Cla_Chr03 FPKM 40.437366 45.709133 21.87537 22.711018 16.381023 16.805502 18.844929 38.347145 36.588207 39.19323