Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01353 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCTGCTCCAATTGTGGAAGGAGATTCTGGAGCTCCACCAACTGATCCTGAAGTCGTGGTGGAAGATGATTATTCTGATGAAGAGATCGATGTCGATGAGCTCGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATTGATATTGTGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCACATGATGGGATCTTGAAGTATATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCTGAGAAGGGAAAACCTGTAACTGGTGCATCAGATAATCTGCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAACGGACCGGCTGCCATAGCCAAGTACCAGGCAGACAATGCAATTCCCGGACGAAACGATGGGTGTAATTCAATTGGTCCAACCCCGCACACCTTGCAGGAACTTCAGGATACCACCCTAGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTCCTCCGCCATGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTCGGGTTGCCTAAGGACCAAGGTCCTCCACCGTACAAGAAGCCTCATGACTTGAAGAAAGCGTGGAAAGTCGGTGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATAGCCAAGATCCGCAAGCTTGTTAGACAGTCCAAGTGTTTGCAGGACAAGATGACCGCCAAGGAGAGTGCGACATGGCTTGCTATTATCAACCAGGAGGAGATCTTGGCCCGGGAGCTTTATCCCGACTCTTGCCCGCCTCTGTCTTCCGGTGGGGGTAGTGGATCATTGGTCATTAACGATTGCAGCGAATACGATGTAGAAGGCGCTGAGGAGGAACCGAGCTTTGATGTTCAAGATCGAAAACCTGATAACCATGGCTCATTCAACTTGGGAATGGACAGAATGAGAGAACGGGTGCCCCTTCGACAACCACCTTATGCAATCAAAGGAGAGGTTCCTGCAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAATATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTTCGTCTCGGGTTTAATGACAGGACATCCAGAGACAATCATCAGTTGACCTGTACATATAGAACTTCTTCAGAATTCAGTGGCTCAAGTTTTCATGTCAACGAGGTTAAACCGGTTATCTTCCCTCAGTCGTTTGCCCCACCCAAGTCAGCTCCACCGCCGGTCAGCTCAGTTCCATCATCCTTCGACCTGTCTGCTTTAGGCGTTCCAGAAGATGGCCAAAAGCTGATCAGTGAGCTCATGTCTATCTATGACACCAACATCCAAGGCAACAAGAACAACGTAAACACCGGTAATGGTGCCATCACGGAAAACCAAAATCTTTCTCAGTTAAAGATCCAACCTCAACAAGACGAATACTTCCGCAATCAAGGTCTAATGATCGAGGGAAACTTCTTCGAGGGTTCAAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGACCGGTTTAAGCCAATGAATTCACCTTTCGAAAACAACCACCATCAGCACAACAATAACAACAACAACAATTTCCACTTAATGTTTGGCTCTCCATTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGAGTAGCAGCCATCGATACACTGTCGAAACAGCAGGACATTACATTATGGTATCATTGA 1884 46.39 MMMMFNEMGFCDDMDFLSAPIVEGDSGAPPTDPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIVKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHGSFNLGMDRMRERVPLRQPPYAIKGEVPANLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCTYRTSSEFSGSSFHVNEVKPVIFPQSFAPPKSAPPPVSSVPSSFDLSALGVPEDGQKLISELMSIYDTNIQGNKNNVNTGNGAITENQNLSQLKIQPQQDEYFRNQGLMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNHHQHNNNNNNNFHLMFGSPFDLSTFDYKEEVPGVAAIDTLSKQQDITLWYH 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28977447 28979330 + ClCG03G014100.1 Cla03g01353 269853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01353 627 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 2 626 - -
Cla03g01353 627 MobiDBLite consensus disorder prediction 334 354 - -
Cla03g01353 627 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 626 IPR006957 GO:0005634
Cla03g01353 627 MobiDBLite consensus disorder prediction 336 354 - -
Cla03g01353 627 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
Cla03g01353 627 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
Cla03g01353 627 Coils Coil 48 68 - -
Cla03g01353 627 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Cla03g01353 627 Pfam Ethylene insensitive 3 49 296 IPR006957 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01353 K14514 EIN3; ethylene-insensitive protein 3 - csv:101206055 1149.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01353 Cla-Chr3:28977447 Cla08g00868 Cla-Chr8:21125416 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g878 . . . . . . . . . Cmo11g00819 . . . . . . Cpe18g00129 . . . . . . . . . . . . . . . . Cone11ag0985 Cone18ag0594 Lsi06g00444 . . . . . . . . . . . . . . Cma11g00814 . . . . Cpe04g00955 . . . . . . . Cla03g01353 Cam03g1432 Cec03g1468 Cco03g1460 Clacu03g1455 Cmu03g2014 Cre03g1685 . . . Cme02g00432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla03g01353 . 2 626 EIL Transcription Factor Family AT2G27050 58.2 1.2e-190 663.3
Cla08g00868 . 71 556 EIL Transcription Factor Family AT2G27050 62.8 5.6e-167 584.7
Cla03g01291 . 44 326 EIL Transcription Factor Family AT2G27050 62.5 5.2e-96 349.0
Cla03g01291 . 44 578 EIL Transcription Factor Family AT1G73730 55.4 2.3e-146 516.2
Cla03g01353 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.6e-105 378.3
Cla08g00868 . 101 396 EIL Transcription Factor Family AT1G73730 61.3 2.4e-103 373.2
Cla07g00914 . 27 273 EIL Transcription Factor Family AT1G73730 54.3 9.3e-71 265.0
Cla03g01353 . 3 626 EIL Transcription Factor Family AT3G20770 62.5 1.4e-211 733.0
Cla08g00868 . 71 554 EIL Transcription Factor Family AT3G20770 63.9 1.5e-170 596.7
Cla03g01291 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.6e-98 357.5
Cla07g00914 . 27 364 EIL Transcription Factor Family AT5G65100 50.6 3.5e-94 342.8
Cla03g01291 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 4.6e-70 262.7
Cla07g00914 . 27 364 EIL Transcription Factor Family AT5G10120 54.2 5.4e-96 348.6
Cla03g01291 . 44 290 EIL Transcription Factor Family AT5G10120 55.2 6.5e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60842 PF04873 EIN3 3.50E-129 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01353 Cla_Chr03 FPKM 11.112263 13.76123 48.252007 53.354359 21.991426 18.153595 25.449755 34.711731 40.364975 35.90395