Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01404 ATGGGGAACTGCTGGTATCGATGGGTACCTACGGTTAATAGGGTATCTTCTAATGCAAAATCAGAATCTCCAAAAGTTGATAGTACATCACCTTATCTAAGGAACAATGAACACAATTTGCCCTCTAACCCCAAAGAAGTAGAAGACTTGCGTCGTGACTCGGCCACTAATCCCCTGATTGCATTTACATTCGAAGAACTGAAGTTAATCACCGGAAATTTTAGACAGGACCGCGTGTTGGGCGGAGGAGGGTTCGGAAGTGTTTATAAAGGGTTCATTACAGAGGATTTGAGAGAAGGAATTGTTCCTCTTCCAGTGGCTGTTAAGGTTCATGATGGGTTTAATAGTTATCAAGGCCACAGAGAATGGCTGGCAGAAGTCATATTTCTGGGGCAGCTTTCTCATCCAAATTTGGTAAAGTTGATTGGATACTGTTGTGAAGACGAGCATCGTGTACTCATATATGAGTACATGGCTCGGGGGAGCGTGGAAAACAATTTGTTTTCAAGTAAGCAGCCAAGAGTGTTGCTTCCTTTGCCTTGGTCCATTAGAATGAAAATTGCCTTTGGTGCTGCGAAAGGACTAGCATTTCTCCACGAAGCAGAAAAGCCCGTCATCTATCGTGATTTTAAGACGTCGAATATTCTGCTTGATTCGGACTATAATCCGAAGCTTTCCGACTTTGGCCTCGCGAAAGATGGACCGGTAGGGGACAAATCTCATGTCTCTACTCGTATAATGGGAACGTATGGATATGCTGCACCAGAATACATATTGACAGGCACGAGACATTTGACCCCTCGAAGCGATGTTTATAGCTTTGGAGTTGTTCTTCTTGAACTACTCACAGGGAGAAAGTCACTGGACAAACTACGACCAGCTCGAGAGCAAAACCTTACCGATTGGGCTCTTCCTCTCCTGAAAGAGAAGAAGAAGCTGATGAGCATCGTGGATCCAAGACTAGGAGGAGAATATCCTGTGAAAGGATTTCACAAGGCAGCAATGCTGGCATACCATTGCCTGAACAAGAACCCGAAAGCGAGGCCGCTGATGAGAGACATCGTCGACTCGTTGGAGCCGTTACAGGAAGTAATTGACGAGGCGGTAGTACCCTCTGAAACAACCTCCTCACCTCTTGTTGCTAATGAGAGTGAGACTAGGTGA 1164 45.36 MGNCWYRWVPTVNRVSSNAKSESPKVDSTSPYLRNNEHNLPSNPKEVEDLRRDSATNPLIAFTFEELKLITGNFRQDRVLGGGGFGSVYKGFITEDLREGIVPLPVAVKVHDGFNSYQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMARGSVENNLFSSKQPRVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDSDYNPKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYILTGTRHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLTDWALPLLKEKKKLMSIVDPRLGGEYPVKGFHKAAMLAYHCLNKNPKARPLMRDIVDSLEPLQEVIDEAVVPSETTSSPLVANESETR 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29538919 29541910 - ClCG03G014600.1 Cla03g01404 269904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01404 387 ProSitePatterns Protein kinases ATP-binding region signature. 80 109 IPR017441 GO:0005524
Cla03g01404 387 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 9 365 - -
Cla03g01404 387 ProSiteProfiles Protein kinase domain profile. 74 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla03g01404 387 SUPERFAMILY Protein kinase-like (PK-like) 55 359 IPR011009 -
Cla03g01404 387 MobiDBLite consensus disorder prediction 17 49 - -
Cla03g01404 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cla03g01404 387 Gene3D Phosphorylase Kinase; domain 1 37 157 - -
Cla03g01404 387 Gene3D Transferase(Phosphotransferase) domain 1 158 376 - -
Cla03g01404 387 PANTHER OS01G0588500 PROTEIN-RELATED 9 365 - -
Cla03g01404 387 MobiDBLite consensus disorder prediction 17 40 - -
Cla03g01404 387 Pfam Protein tyrosine and serine/threonine kinase 76 358 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01404 - - - csv:101217285 734.947
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01404 Cla-Chr3:29538919 Cla11g01094 Cla-Chr11:22362922 2.73E-141 dispersed
Cla03g01404 Cla-Chr3:29538919 Cla11g00133 Cla-Chr11:1671135 1.31E-146 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g21 Blo03g01017 Blo03g01402 Bda02g00670 . . . . Bma07g01363 Cmo10g00837 Cmo11g00780 Cma10g00808 . . . . . Cpe18g00272 Bhi02g01724 . . . . . . . . . . . . . . . Cone18ag0011 Cone11ag1582 Lsi06g00388 . . . . . . Bda09g00346 . . . . . . . Cma11g00772 . . . . Cpe04g00988 . . . . . . . Cla03g01404 . . . . . . . Csa01g03041 Chy02g01319 Cme02g00352
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001315 2 3 3 3 3 0 4 2 0 1 2 0 4 1 0 3 0 0 3 0 2 0 0 0 2 2 0 0 0 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80450 PF07714 PK_Tyr_Ser-Thr 7.20E-41 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01404 Cla_Chr03 FPKM 3.880023 4.008505 7.287224 6.63249 0.359465 0.192066 0.254374 4.864962 4.251947 4.790251