Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01405 ATGGAGAAGCTAAAAATCCAGGACAGGGAAAACCTTATCCAGGATAAGGACAAGCTGTCCTTGATTGGAACAAAATTAGGATTAGTGGAAAATCCCATCCCAGATAGGGACATCCCTGTCCTTTCCCAATTAGGTTTTCCTCCGCTAAGTGGCAACAACTCCACCACTCTCCTTCTTCATGTCACCGCGCCACTCACAACTCGCCACGTGGAGATTCAACCAATAGAAAGCGTAGAGAAATCACCCGCGGCGAGATCTACCTCTATGGCTACTGTTGCTTCACCTCCTTCTACAGATCGTATCCTTACTATTGTATTTCATATGGAAGCTGCAGATTTGCTGCAGAAGTTGTCATTGGATGCTCAGGCCAAGCCTGTTGAGATTCCAGAGCCAACGAAAAAGAGATCTTGCAACAAAATTGAAGTTTATAGATGCAGCTTGACACAACAATCTGCTAATCAATATGGGTCCATTGATTCTGCGAATGCTGCTATTTCTCAGATTCCAAATGAACGGTCTGTGACTCCATTTTTACAGGAATTCATGGATCCAAGCATGTGCTATCTTCCTAATGGATATCCATCTTATTACTATGGAGGGTTTGATGGGACTGGAAATGACTGGGATGATTATTCAAGATATACAAATTCAGATGGGGTAGAAATGACTTCTGGAGTCTATGGGGATAATGGATCTCTTATGTATCACCATGGTTATGGATATGGACCCTATGGTCCTTATTCACCTGCAGCTTCTCCAGTTCCCTCTATGGGGAATGATGGTCAGCTGTATGGACCTCAGCACTACCAATATCCTCCATATTTTCAGCCTCTTACTCCGACCAGTGGGCCGTATACTCCTAGTCCTACAACAGTTCCTCCAACCCAGGGAGACATTTCTACCTCTGCAGCCACTGAGCAAAAGCCAATTCCAGTGGAAACAACTAATGCAAATGGTAATGGCTTGACAAATGGTGGGGGAACAAAGGGAAACAATGGTGCAGCTCCCTTAAAATCTACATATCAAAATTCAACATTTGGTTCAAATGCGTATGCAAGGGGTGCTTTGCCAGGACATATTCCTGCTTCGGGTTATCAGGATCCCAGATACGGTTTTGAAGGGTCGAGGAATTCTTTCCCATGGTTAGATGGTCCACTGTACTCAGATGGACAGTCTAGGCTTGTCAGTAGCTCTACTATTACCTCTTCTATCTCAAATGCAAACAACATACCTTCTTCAAGGAGTCCAAGTTTCCGTCCTGGCTCTCACTATGTAGGTTTTCCTCATCCTAGACCCATGTCAGGAATGAACACCACCCAGGGTTATATAAATAGGATGTACCCCAATAAGTTGTATGGTCAATTTGGAAACACGGTCAGATCTGGTGTAGGGTTTGCCTCACATGGTTATGATTCACGATCTAATGGGCGTGTGTGGCTTGCGGTGGACAACAAATACAAGCCTAGGGGTCGAAATGGTGGCTATTATGGATATGGAAATGAGAACATGGATGGATTGAATGAGCTGAATAGGGGACCAAGAGCTAAGGGTAGCAAGAACCAGAAGGGATTTGTGCCCAGTGTTCTAGCTGTGAAGGGACAACTTTTACCACCAATGAATGCAACAGATGAAGAAGAAAAAGATAAGGTGTCTACTCCAGACCGAGATCAATACAACAAAGCAGATTTTCCTGAGGAATATGCTGAGGCCAAATTCTTTGTTATTAAATCATACAGCGAAGATGATGTGCACAAAAGCATCAAGTATAATGTTTGGGCTAGCACACCTAATGGTAACAAGAAACTTGATGCTGCATACCAGGAAGCTCAAGAGAAGGCTGGTGGTTGTCCTGTTTTTCTTTTCTTTTCGGTCAATACCAGTGGGCAATTTGTTGGCCTTGCTGAGATGATTGGACCAGTTGACTTTCAGAAGAACTTGGAATACTGGCAACAGGACAAATGGAACGGCTGTTTCCCTGTCAAGTGGCATGTAGTGAAGGATGTTCCCAACAGCCTTTTGAAACACATTATTCTTGAGAACAATGAGAACAAGCCTGTTACCAATAGCAGGGACACACAGGAGGTTAAGCTGGAGCCTGGACTTAAGATGGTAAAAATCTTCAAGGAGCATGCAAGCAAAACATGCATTTTGGACGATTTTGGTTTCTACGAGGCACGACAGAAGACAATCCAAGAGAAGAAAGCCAAGCAACAGCAGTTCAAGAAACAGGTTTGGGAAGGAAAGCCTACTGATGACAAGAAGGAAGTTTCTGAAGTAGTGGATGTGAAAACTCCAAAGCCAGTTGAAGCCACAAATGATTTGGTAAAGGAGGATACGAAGATCTCTGAAAATGGATCAGTTTTGAAAACTGTAGATGCCCCAAAGGGCGGCGCAAAACCAGTTACATCATCACCATCAGAGAAGAGAAGTGGTGTAGCGAACGGATACTAA 2451 43.82 MEKLKIQDRENLIQDKDKLSLIGTKLGLVENPIPDRDIPVLSQLGFPPLSGNNSTTLLLHVTAPLTTRHVEIQPIESVEKSPAARSTSMATVASPPSTDRILTIVFHMEAADLLQKLSLDAQAKPVEIPEPTKKRSCNKIEVYRCSLTQQSANQYGSIDSANAAISQIPNERSVTPFLQEFMDPSMCYLPNGYPSYYYGGFDGTGNDWDDYSRYTNSDGVEMTSGVYGDNGSLMYHHGYGYGPYGPYSPAASPVPSMGNDGQLYGPQHYQYPPYFQPLTPTSGPYTPSPTTVPPTQGDISTSAATEQKPIPVETTNANGNGLTNGGGTKGNNGAAPLKSTYQNSTFGSNAYARGALPGHIPASGYQDPRYGFEGSRNSFPWLDGPLYSDGQSRLVSSSTITSSISNANNIPSSRSPSFRPGSHYVGFPHPRPMSGMNTTQGYINRMYPNKLYGQFGNTVRSGVGFASHGYDSRSNGRVWLAVDNKYKPRGRNGGYYGYGNENMDGLNELNRGPRAKGSKNQKGFVPSVLAVKGQLLPPMNATDEEEKDKVSTPDRDQYNKADFPEEYAEAKFFVIKSYSEDDVHKSIKYNVWASTPNGNKKLDAAYQEAQEKAGGCPVFLFFSVNTSGQFVGLAEMIGPVDFQKNLEYWQQDKWNGCFPVKWHVVKDVPNSLLKHIILENNENKPVTNSRDTQEVKLEPGLKMVKIFKEHASKTCILDDFGFYEARQKTIQEKKAKQQQFKKQVWEGKPTDDKKEVSEVVDVKTPKPVEATNDLVKEDTKISENGSVLKTVDAPKGGAKPVTSSPSEKRSGVANGY 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29556530 29561195 + ClCG03G014610.2 Cla03g01405 269905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01405 816 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 157 768 IPR045168 -
Cla03g01405 816 MobiDBLite consensus disorder prediction 292 333 - -
Cla03g01405 816 MobiDBLite consensus disorder prediction 768 816 - -
Cla03g01405 816 Pfam YT521-B-like domain 570 708 IPR007275 GO:0003723
Cla03g01405 816 PANTHER YTH DOMAIN-CONTAINING PROTEIN-RELATED 157 768 - -
Cla03g01405 816 MobiDBLite consensus disorder prediction 535 559 - -
Cla03g01405 816 MobiDBLite consensus disorder prediction 541 559 - -
Cla03g01405 816 ProSiteProfiles YTH domain profile. 570 707 IPR007275 GO:0003723
Cla03g01405 816 Gene3D ph1033 like domains 547 721 - -
Cla03g01405 816 MobiDBLite consensus disorder prediction 280 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01405 - - - csv:101215929 1260.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01127 Cla-Chr3:23395136 Cla03g01405 Cla-Chr3:29556530 8.44E-07 dispersed
Cla03g01405 Cla-Chr3:29556530 Cla06g00400 Cla-Chr6:4917266 5.65E-90 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g19 . Blo03g01401 . . . . . Bma07g01364 Cmo10g00834 Cmo11g00779 Cma10g00807 . . . Sed08g0966 . Cpe18g00273 Bhi02g01726 Tan09g1011 Cmetu02g0710 . Hepe09g0977 . . . . . . . . . . . Cone18ag0010 Cone11ag1583 Lsi06g00387 . . . . . Bda07g00777 Bda09g00345 . Bpe11g00951 . . . . . Cma11g00771 . . . . Cpe04g00880 . . . . . . . Cla03g01405 Cam03g1485 Cec03g1522 Cco03g1518 Clacu03g1507 Cmu03g2064 Cre03g1737 . Csa01g03039 Chy02g01318 Cme02g00351
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004606 1 3 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01405 Cla_Chr03 FPKM 11.376734 12.508204 7.356584 6.779742 24.179682 22.179867 24.777033 4.670435 3.723866 5.00348