Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01408 ATGGCAGACCAAGGCTTGGAAGGAGCCCAACCCGTTGATCTTAAAAAGCATCCTTCTGGGATTGTGCCTACCCTTCAGAACATTGTATCAACAGTCAATCTGGATTGCAAGTTGGATCTGAAGGCCATTGCTCTGCAAGCTCGCAATGCTGAATATAATCCCAAGCGTTTTGCTGCTGTTATCATGAGAATAAGGGAGCCAAAAACTACAGCATTGATATTTGCATCGGGAAAGATGGTCTGTACTGGAGCTAAGAGTGAACAGCAATCCAAATTAGCTGCAAGAAAGTATGCACGCATTATACAAAAACTTGGTTTTCCTGCCAAGTTCAAGGATTTTAAGATTCAGAATATTGTTGGCTCATGTGATGTTAAGTTTCCCATAAGGCTTGAGGGTCTTGCTTATTCACACGGAGCCTTTTCAAGTTACGAACCAGAGTTATTCCCTGGATTGATATATCGGATGAAACAACCGAAGATTGTGCTTCTCATTTTCGTCTCTGGAAAAATAGTTCTAACTGGGGCTAAGGTGAGAGAGGAGACATATACAGCATTTGAGAACATATACCCAGTGCTTACGGAATTCAGGAAAAACCAGCAATGGTAA 606 41.91 MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQW 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29582113 29586579 - ClCG03G014640.2 Cla03g01408 269908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01408 201 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 23 104 IPR000814 GO:0003677|GO:0006352
Cla03g01408 201 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 112 195 IPR000814 GO:0003677|GO:0006352
Cla03g01408 201 ProSitePatterns Transcription factor TFIID repeat signature. 143 192 IPR030491 -
Cla03g01408 201 PANTHER TATA-BOX-BINDING PROTEIN 1 1 200 - -
Cla03g01408 201 PRINTS Transcription initiation factor TFIID signature 25 40 IPR000814 GO:0003677|GO:0006352
Cla03g01408 201 PRINTS Transcription initiation factor TFIID signature 49 68 IPR000814 GO:0003677|GO:0006352
Cla03g01408 201 PRINTS Transcription initiation factor TFIID signature 68 86 IPR000814 GO:0003677|GO:0006352
Cla03g01408 201 PRINTS Transcription initiation factor TFIID signature 115 131 IPR000814 GO:0003677|GO:0006352
Cla03g01408 201 PRINTS Transcription initiation factor TFIID signature 139 154 IPR000814 GO:0003677|GO:0006352
Cla03g01408 201 PRINTS Transcription initiation factor TFIID signature 158 174 IPR000814 GO:0003677|GO:0006352
Cla03g01408 201 PANTHER TATA-BOX BINDING PROTEIN 1 200 IPR000814 GO:0003677|GO:0006352
Cla03g01408 201 Gene3D - 30 115 IPR012295 -
Cla03g01408 201 SUPERFAMILY TATA-box binding protein-like 112 198 - -
Cla03g01408 201 Hamap TATA-box-binding protein [tbp]. 19 198 IPR000814 GO:0003677|GO:0006352
Cla03g01408 201 SUPERFAMILY TATA-box binding protein-like 21 114 - -
Cla03g01408 201 CDD TBP_eukaryotes 22 195 IPR033710 GO:0003677|GO:0006352
Cla03g01408 201 Gene3D - 26 195 IPR012295 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01408 K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein - csv:101216807 395.201
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01163 Cla-Chr3:24242066 Cla03g01408 Cla-Chr3:29582113 3.57E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g17 . Blo03g01400 . . . . Bma14g00738 Bma07g01366 Cmo10g00832 Cmo11g00778 Cma10g00805 . . . . . Cpe18g00275 . . . . . . . . . . . . . . . . . . Lsi06g00382 . . . . . Bda07g00776 Bda09g00343 . Bpe11g00950 . . . . . Cma11g00770 . . . . Cpe04g00990 . . . . . . . Cla03g01408 Cam03g1488 Cec03g1525 . Clacu03g1510 Cmu03g2067 Cre03g1740 . Csa01g03036 Chy02g01316 Cme02g00348
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002633 2 2 2 3 2 2 2 2 2 1 2 2 2 1 1 2 2 1 2 3 1 2 1 2 3 3 1 2 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla03g01408 Cla_Chr03 FPKM 17.591398 13.781889 58.557007 59.927212 61.417461 72.61731 48.783859 14.044152 15.620938 17.464359