Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01417 ATGGGGAGAGAACTGCAGAAGCAGCCGCAGCAAGAGATGGCCTCCGCGGTGGAGCAGTTGCTCGCTGTGAATCCTTACAATCCGGACATTCTCCCCGATCTCGAAAACTACGTAAACGAGCAGGTGTCGTCAGAAACGTACAGTTTAGATGCCAATCTATGCCTTCTTCGCCTTTACCAGTTTGAGCCCGAGAGAATGAGTACCCAAATTGTGGCTCGCATCCTGGTCAAGGCTCTGATGGCAATGCCAGCTCCGGATTTCAGCCTGTGTCTCTTTTTAATTCCAGAACGAGTGCAAATGGAGGAGCAATTCAAGACTTTGATTATACTTTCCCACTATTTGGAGACTGGAAAGTTCCGTCAATTCTGGGATGAAGCTGCCAAGAACCGTCACATAGTTGAAGCTGTGCCAGGTTTTGAGCAGGCAATTCAAGCTTATGCAGTCCATGTTCTTTCCTTAACTTATCAAAAGGTTCCTAGATCTGTGCTTGCAGAGGTATGGATTTATAAAGCATTTGTCTGCCATTTTAGTAATCCTGGAGTTGGTACTTCAACCATTATTGTTGTCTTTTTTCATTTGGTGTTTCAGTGTATAATGCAATCAATATTGAGGGCCTGTCTTTGGACAAATTTCTTGAGCACCAAGTCGCAAACTCTAGTTGGATTCTTGAGAAAGCATTCCCTTGGATCACATTACTCGCATCTTTCCGATTCTTGGCTAACTGATCCGGTCACCGATTTGAATTACCTAAGAGCATGTTTGGCATATCTTGTAAAGAATCTATTTGACAAGTTAGTTTTAATTCTCCGCCCTATATCTAAGGTTTGTAAAACCCGATTTTGGACAAAACTAGGACTAAAGTGCTTAGTTTATGAGGAGGAACCATCGAAAATTGGTTTGCCTCGATTTCAGTTTGTGAACCGAACCAACCTGATTCGATTCAAGTCAGTTCGGTTTAAAACTGTTTTTTTTTTTACTTCCTCATCTAGCTACTACTTTTCTGTCCCAGCCGCCTCCATCTTTATTGCATTTTCATTAAATAAATTCATGGCTACGTTAAACGGGAAAGTTGCATATTCTTCCCTTTCTAATGTTGGAAAGGTGAACAGAGTCCACAATGATGATGAAGATTGTGATTCTCTATGGGCCATTCCTAATGGTAGTGCGCCTTTCCATTCGAACTCAAAGGTTTCTGTTGAATCTGAAGACTTTATTGAGGATGAGTATGATTCAAGTGATGAGTTCGATATTCCGAAGCAAAATAGTGGGCGGCCAGAGGTGAATTTGAAGAATGTTTTAAATGGGATGTTTGCTATATTGACTGGTGTGAATAAATCTTCGGTTGTCTCCACGGATAAACAAGTTCCCACTTCAAATATTTCATTTCTTGGTTCTGAAAAGAATGGTGATACCTATTTGCACTCCTCGGTGTACATTCCTAGTGCGCCACCTCTTCTTGAGCCGAATACAATTAATTATAATGCTTATAAAGATGTTTTGGAGGCCGAGCCACCAGAGTGGCTTCCAGATAGTTCTTCTTCAATTTGTATGCAATGTACTGCCCCTTTTACTGCAATCACTCGTGGTAGGCATCATTGTCGATTTTGTGGAGGGATTTTCTGCCGAGCCTGTTCAAAGGGGAGGTGTTTGATGCCCATTAAGTTCAGAGAGAGAAATCCACAGAGGGTATGTGATGCCTGCTATGACAGGCTTGATCCTTTACAGGGTGTACTTATTAACAGCATTAGCAATGCTGTGCAAAGGGCGAAACATGATGTGATGGACTGGACGTGTTCAAGAGGGTGGTTGAATCTCCCCATTGGTCTATCCATGGAACATGAGATATACAAAGCATCCAAAACGCTGAGAGGATACTTCCAGGTCTCTAGACTAAATCCTGAAAAGTCTATACCCTTGGCTGTACTAAAGGGGGCCAAAGGTCTTGCTATTTTGACAGTCGCTAAAGGTGGAGTGTTGGTTGCTTACAAATTTGGCACTGGTTTGGTAATTGCTCGAAGGTCAGATGGTTCATGGTCTGCCCCATCAGCTATATTGTCTGTTGGATTGGGATGGGGTGCCCAGATTGGTGGTGAGCTCATGGATTTCATAATCGTGCTTCATGATTCAAAAGCTGTTAAGACATTCTGTAGCCGAATGCACTTTTCTCTTGGTGCTGGGTGTAGTGTCGCTGCTGGACCTGTTGGTAGAGTGTTGGAAGCAGATCTTCGAGCTGGAGATAGGGGTTCTGGCATGTGCTACACATATAGCTGTAGCAAAGTTTACTTCTCGACAGGCGCATTTGTTGGAGTTTCATTGGAAGGAAACATTGTAGCAACAAGGATGGGCACAAATCTATGCTTTTATGGTGATCCATATCTAACCACCTCAGACATTCTGCTGGGGACAGTAGAGAGACCGAGGGCTGCAGAGCCATTGTACTCTGCTCTTGATGACTTCTATTCCATTCTGCAATAA 2475 43.11 MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIILSHYLETGKFRQFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEVWIYKAFVCHFSNPGVGTSTIIVVFFHLVFQCIMQSILRACLWTNFLSTKSQTLVGFLRKHSLGSHYSHLSDSWLTDPVTDLNYLRACLAYLVKNLFDKLVLILRPISKVCKTRFWTKLGLKCLVYEEEPSKIGLPRFQFVNRTNLIRFKSVRFKTVFFFTSSSSYYFSVPAASIFIAFSLNKFMATLNGKVAYSSLSNVGKVNRVHNDDEDCDSLWAIPNGSAPFHSNSKVSVESEDFIEDEYDSSDEFDIPKQNSGRPEVNLKNVLNGMFAILTGVNKSSVVSTDKQVPTSNISFLGSEKNGDTYLHSSVYIPSAPPLLEPNTINYNAYKDVLEAEPPEWLPDSSSSICMQCTAPFTAITRGRHHCRFCGGIFCRACSKGRCLMPIKFRERNPQRVCDACYDRLDPLQGVLINSISNAVQRAKHDVMDWTCSRGWLNLPIGLSMEHEIYKASKTLRGYFQVSRLNPEKSIPLAVLKGAKGLAILTVAKGGVLVAYKFGTGLVIARRSDGSWSAPSAILSVGLGWGAQIGGELMDFIIVLHDSKAVKTFCSRMHFSLGAGCSVAAGPVGRVLEADLRAGDRGSGMCYTYSCSKVYFSTGAFVGVSLEGNIVATRMGTNLCFYGDPYLTTSDILLGTVERPRAAEPLYSALDDFYSILQ 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29681943 29692381 - ClCG03G014740.2 Cla03g01417 269917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01417 824 SMART fyve_4 502 573 IPR000306 GO:0046872
Cla03g01417 824 Pfam FYVE zinc finger 506 571 IPR000306 GO:0046872
Cla03g01417 824 SUPERFAMILY FYVE/PHD zinc finger 505 577 IPR011011 -
Cla03g01417 824 PANTHER SH3YL1 PROTEIN 392 823 - -
Cla03g01417 824 SUPERFAMILY ARM repeat 10 135 IPR016024 -
Cla03g01417 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 578 IPR013083 -
Cla03g01417 824 CDD SYLF_FYVE 613 819 - -
Cla03g01417 824 Pfam CSN8/PSMD8/EIF3K family 67 165 IPR033464 -
Cla03g01417 824 Gene3D ARM repeat; domain 1 8 125 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Cla03g01417 824 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 510 572 IPR017455 -
Cla03g01417 824 PANTHER LAS17 BINDING PROTEIN-LIKE 392 823 - -
Cla03g01417 824 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 8 252 IPR009374 GO:0003743|GO:0005737|GO:0005852
Cla03g01417 824 Pfam Las17-binding protein actin regulator 688 817 IPR007461 -
Cla03g01417 824 Gene3D - 128 177 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01417 Cla-Chr3:29681943 Cla05g01609 Cla-Chr5:27385849 5.10E-10 dispersed
Cla03g00692 Cla-Chr3:8374504 Cla03g01417 Cla-Chr3:29681943 1.58E-130 transposed
Cla03g01417 Cla-Chr3:29681943 Cla09g00128 Cla-Chr9:1284072 2.60E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01417 K20523 - csv:101214492 909.827