Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla03g01424 | ATGGCCGCAGCTCAGCTCACTGGGTCCTTAATTTCTGCGAGGAATTTGCCTTCTTTCAATGGCCTTCGTCCTTCTGCCGTGAAATTCTCTCCTTCGGTTGCCCATGTTAGAGTCGGGGGTTTGGCCAACAGATCCTTCACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGTGATAGAGTGTTGGTGAAGTTAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTCGTTGCAGTTGGAGAAGGCAAGACAATTGGAAATACCAAAGTGGAAGCAAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGTTAGAATTCAATGGTTCAAAGCATCTTATTCTCAAGGAAGATGATATAGTTGGTATCCTAGAGACAGATGATGCGAAAGATCTTCAGCCCCTAAACGACCGGGTCTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCAGGAGGTTTATTGTTGACAGAGGCAACCAAAGAGAAGCCTTCCATCGGAACGGTGATCGCAGTTGGTCCTGGTCCTTTGGACGAGGAGGGCAAAAGGAAACCGCTATCTATCGCAGTGGGAAACAACGTGATGTACTCAAAGTACGCCGGGAATGAGTTCAAAGGCAAAGATGGCTCTGATTACATCGCCTTGAGGGCTTCAGACGGGGGAATTGAGATGGATTTTGAGAGACGTAGAAGAGAATTGAAAAAGGCAACTGAGATGGAAATTTCGACCATCGCCGTTCTCCTTCTCCGCCGGCGACATAGAGCCCCTGCCTTCTCTGCCTCTCCAATTTCTCCGACGACTTATCTCTCGTTTGCTTCCACTTTCCTATTGAAACAATCGATGGGTTCAGACGAGGAGGTTGTGGAAATTAGTAGCTTGGAAAGGGGTTTATTGTCAGAATGCAGTTCTGATTTGGAACCTGAAAGTGATGATGAGCCTGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAACTTTGTAAAGTATCATACAGCACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAGTAAGAAGATACATTCTGCGGAAAGATATTCAATCGAAGAAGCTTTATCTTACACCGAATTCCATAATCTACAAGGTTACAAGACCTGTGCCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCATTCAGTGGCAGACATTATAATTGAACAAGGATATTTAGAGTCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGACGACCACCTGGTGATGATGTTCAAATTCAAGGAATTACAGATCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTTTCTGGTATGAGAGATGATGGCAACTCTTCTCAAATTTCTACAATTGAAGAAGTTTTAAATACAAAGTCATCCCCATCTAAATCTCTAAAGTATGACCCGTATTTATATTCGGGGGAACAAGTACTTCAGAAAGTAGAGGAGGTTGGAAGTTCTGTGAAGAGAGTTCAAGCTTTGATCGAAGAGCAACGGTCACAATTCATGTATAGTACGAATAAGCATATCACTGATTATAGTACCAATAAGCACATCACTGATTCTGGTCCTGTCAAAAAGGGAGTAAATGTCTATATGATGAAATGGGATTCAGATCATGGATTGATGATAATCAACCATTATGACTATAGGTGCTTCTCTTTTAGATGCTATGATTGTGATCAGCTCCAAAATGGTACAAGACCAGTCCCAATTTCATGA | 1881 | 43.17 | MAAAQLTGSLISARNLPSFNGLRPSAVKFSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKLKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGKRKPLSIAVGNNVMYSKYAGNEFKGKDGSDYIALRASDGGIEMDFERRRRELKKATEMEISTIAVLLLRRRHRAPAFSASPISPTTYLSFASTFLLKQSMGSDEEVVEISSLERGLLSECSSDLEPESDDEPVLFAASFQEMEDNFVKYHTAQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLHSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVQIQGITDPIAFKKAVLMRLSGMRDDGNSSQISTIEEVLNTKSSPSKSLKYDPYLYSGEQVLQKVEEVGSSVKRVQALIEEQRSQFMYSTNKHITDYSTNKHITDSGPVKKGVNVYMMKWDSDHGLMIINHYDYRCFSFRCYDCDQLQNGTRPVPIS | 626 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 29827104 | 29836783 | - | ClCG03G014820.2 | Cla03g01424 | 269924 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla03g01424 | 626 | SUPERFAMILY | GroES-like | 62 | 155 | IPR011032 | - | |
Cla03g01424 | 626 | CDD | cpn10 | 162 | 249 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | Gene3D | GroES chaperonin | 57 | 157 | IPR037124 | GO:0006457 | |
Cla03g01424 | 626 | Gene3D | GroES chaperonin | 158 | 250 | IPR037124 | GO:0006457 | |
Cla03g01424 | 626 | SMART | Cpn10_2 | 161 | 253 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | SMART | Cpn10_2 | 63 | 154 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | PANTHER | 20 KDA CHAPERONIN, CHLOROPLASTIC | 1 | 249 | - | - | |
Cla03g01424 | 626 | ProSitePatterns | Chaperonins cpn10 signature. | 64 | 88 | IPR018369 | GO:0005524|GO:0006457 | |
Cla03g01424 | 626 | SUPERFAMILY | GroES-like | 161 | 249 | IPR011032 | - | |
Cla03g01424 | 626 | Pfam | Chaperonin 10 Kd subunit | 64 | 153 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | Pfam | Chaperonin 10 Kd subunit | 162 | 249 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | PANTHER | 10 KDA HEAT SHOCK PROTEIN | 1 | 249 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | CDD | cpn10 | 63 | 154 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | Hamap | Co-chaperonin GroES [groES]. | 63 | 155 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | Hamap | Co-chaperonin GroES [groES]. | 161 | 255 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | ProSitePatterns | Chaperonins cpn10 signature. | 162 | 186 | IPR018369 | GO:0005524|GO:0006457 | |
Cla03g01424 | 626 | PRINTS | 10kDa chaperonin signature | 86 | 107 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | PRINTS | 10kDa chaperonin signature | 64 | 79 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | PRINTS | 10kDa chaperonin signature | 141 | 154 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cla03g01424 | 626 | PRINTS | 10kDa chaperonin signature | 120 | 132 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g01424 | Cla-Chr3:29827104 | Cla06g00003 | Cla-Chr6:51942 | 3.47E-30 | dispersed | |
Cla03g01424 | Cla-Chr3:29827104 | Cla05g00303 | Cla-Chr5:2778952 | 1.21E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla03g01424 | K04078 | - | csv:101212396 | 454.521 |