Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01425 ATGACGAAGCCGTCGTCCCCTCACAAATCCTCCGCCGCCGCCGTTGACACTTCCGATTCACGGTACAAGGGAGTACGGCGCCGGAAATGGGGCAAATGGGTTTCCGAAATCCGTCTCCCCAACAGCCGCGAGCGGATCTGGTTAGGTTCTTATGATTCAGCCGAGAAAGCGGCGCGTGCATTCGACGCGGCACTATTTTGCTTACGTGGCCGTTCCGCTCGTTTCAATTTCCCAGATAACCCACCGGAAATTGCCGGTGCTAGTTTGCTCTCCCGAGCAGAGATTCAATCCGTCGCTGCCCAATTCGCTAACTCCGACCCACCACCCTCGTCGGAATGTACACGACCCGCCGTCGATTCGCCGTCGGTGGTTTCCGAAGTGACTACCTCTGTAATTGAATGTGATGAAAGATCGCCGTTTTTGGATCTTCACACCGCCATGGGATCGGGAAATTACGGGTCGGATTTCGGGTTATTTCCGGAATATAATCCGTTTTATAATGAAATGTTTATTAATGGTTCTTCTTCTTCAACAACAGCTCCTTGTTTTGATTATGGAGATGAGAATTTTGACGCCATCACCACTCATCAAGATTCATCATTCCTCTGGAATTTCTGA 618 50.49 MTKPSSPHKSSAAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRAEIQSVAAQFANSDPPPSSECTRPAVDSPSVVSEVTTSVIECDERSPFLDLHTAMGSGNYGSDFGLFPEYNPFYNEMFINGSSSSTTAPCFDYGDENFDAITTHQDSSFLWNF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29849775 29850392 + ClCG03G014830.1 Cla03g01425 269925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01425 205 MobiDBLite consensus disorder prediction 1 24 - -
Cla03g01425 205 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Cla03g01425 205 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Cla03g01425 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 205 - -
Cla03g01425 205 SUPERFAMILY DNA-binding domain 20 80 IPR016177 GO:0003677
Cla03g01425 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017-LIKE 7 205 - -
Cla03g01425 205 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Cla03g01425 205 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Cla03g01425 205 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Cla03g01425 205 CDD AP2 20 80 IPR001471 GO:0003700|GO:0006355
Cla03g01425 205 MobiDBLite consensus disorder prediction 1 17 - -
Cla03g01425 205 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01425 Cla-Chr3:29849775 Cla08g00976 Cla-Chr8:22421618 1.01E-44 dispersed
Cla08g00576 Cla-Chr8:17460243 Cla03g01425 Cla-Chr3:29849775 7.53E-27 dispersed
Cla03g01425 Cla-Chr3:29849775 Cla08g01586 Cla-Chr8:28555426 1.13E-23 transposed
Cla03g01425 Cla-Chr3:29849775 Cla05g02061 Cla-Chr5:32319879 1.54E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60845 PF00847 AP2 8.10E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01425 - - csv:101213288 327.405