Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla03g01437 ATGATGTGTACTTTTAAGGAATGGAGCATCGCCGCCTCTGTTCTGTCATCATCAGATATTTCGCTGTCCATCTGTTACAAGCGGGGCTCCTTGCGGCTGCTCGATCAGAGGAAACTCCCTTTGGAAACTGTCTACTTGGATATCAAGGACGCAACAGATGGATGGCACGCAATAAGGGATATGGTAGTACGCGGGGCACCTGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAAGTGTACAACTCAGACCCTTGTAATGGGACGCCCAACGATGCAGCTTTGTTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCAGTTAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATTGTATCTGGTGCCGCTGCAATTTCTTCTGAAGCCAAGAGTGTCTTCCAAGCATATATAGAGGCCGCCGAAGCAATGCTGGAGGATGATGTTGCTTCAAACAAAGCCATTGGGTCCTATGGAGCAACTTATATCCGTGATCAACAAAAATCGTTGGAGAAGTTTTCCGTTCTAACACACTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTTATTCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACAGAAACGCGGCCCTTTAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTGATAGCTGATTCTGCTGCCGCGGCCTTAATGAAATTTGGAAGAGTGAATGCTGTTGTAGTTGGGGCAGATCGTGTAGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAATATTCCATTCTTTGTGGCTGCACCATTGACTTCAATAGACTTATCCCTTTCTTCTGGAGAAGAAATCGTTATAGAGGAAAGGTCTCCCAAAGAGTTGTTGAACTCCCGTGGAGGTCTCGGTGAGCAAGTCGCAGCATCTGGTATCGCTGTCTGGAACCCTGCTTTCGATGTTACTCCTGCTCATCTGATTTCTGGAATCATAACGGAAAAGGGAGTCATCACGAAAGTGGCGGGTTCTGAATCTTTCAACATAAAGGAGTTTGTTCAAAAGACGGAGGGGACTCATGCATAG 1161 46.43 MMCTFKEWSIAASVLSSSDISLSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAAEVYNSDPCNGTPNDAALFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSGAAAISSEAKSVFQAYIEAAEAMLEDDVASNKAIGSYGATYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKVAGSESFNIKEFVQKTEGTHA 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29948879 29952831 + ClCG03G014970.2 Cla03g01437 269937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla03g01437 386 Gene3D - 176 380 IPR042529 -
Cla03g01437 386 Gene3D - 11 167 IPR027363 -
Cla03g01437 386 SUPERFAMILY NagB/RpiA/CoA transferase-like 23 365 IPR037171 -
Cla03g01437 386 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 21 374 IPR005251 -
Cla03g01437 386 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 23 379 - -
Cla03g01437 386 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 23 379 - -
Cla03g01437 386 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 48 365 IPR011559 GO:0044249
Cla03g01437 386 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 23 365 IPR005251 -
Cla03g01437 386 Pfam Initiation factor 2 subunit family 63 364 IPR000649 GO:0044237
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01437 Cla-Chr3:29948879 Cla09g00127 Cla-Chr9:1270848 8.04E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla03g01437 K08963 - csv:101210526 645.966